Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00015 ATGGAGAACATTTCTGTGCTGTTCAACAAGGAAGAAGGTCAGATTTATTCGTCCATTGGCTTTCGGTTTCAACCAACAGATGAAGAGCTACTCACTCATTTTCTGTACAAGAAGACCAATAATGCCAACTTCTCTCATATAGCCATTACAGAAGTGGTTATACAAGAGTTTGAGGCTTGGGATTTGCCGTGGCTAGCGAAAATGGGAGATTATGAGTGGTATTTTTTCTGCCAGAGAATCAGCAGAAACCAAGATGGTTCTAAAGCCAACAGAGCCACTGAAGACGGGTACTGGAAATCCACAGGGAACGATGCGAATATTAACGACAGAGAAGGAAACCTGATAGGGAAGAAGAAAACTCTAGTTTTCTACATGGGAGGACCACCAACTGGAGTCAAAACGGACTATGTCATGCATGAATACAGACTAGCTGGAGACTCCTCTAAACCTGGAGAGAACGAGTGGGTGATTTGCAGGGTGTTTGAGAAGACTTCAGAGCGCCAGAAAACCCACCTTTATGATTTACTGAGGTTTTAA 537 0.432 MENISVLFNKEEGQIYSSIGFRFQPTDEELLTHFLYKKTNNANFSHIAITEVVIQEFEAWDLPWLAKMGDYEWYFFCQRISRNQDGSKANRATEDGYWKSTGNDANINDREGNLIGKKKTLVFYMGGPPTGVKTDYVMHEYRLAGDSSKPGENEWVICRVFEKTSERQKTHLYDLLRF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00015 178 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 167 - -
Accr8g00015 178 SUPERFAMILY NAC domain 14 163 IPR036093 GO:0003677|GO:0006355
Accr8g00015 178 ProSiteProfiles NAC domain profile. 17 163 IPR003441 GO:0003677|GO:0006355
Accr8g00015 178 Gene3D NAC domain 26 168 IPR036093 GO:0003677|GO:0006355
Accr8g00015 178 Pfam No apical meristem (NAM) protein 19 143 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00015 Accr-Chr8 279841 280544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00015 10 172 NAC Transcription Factor Family AT5G39610 52.381 4.13e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Accr8g00015 NAM 8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00015 - - gmx:547650 198.364