Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr8g00002 ATGGAAGCTGAAGAGATCGAAAGAGTTGGAAGGTTCCATTTTTTATCGAAATTGATATTATCCGCCATTTCTGGGGCTCTCACGGGATGCTTTGCCATTGCTGGAGCCATCACAGGAGCCGTAGCTGGTGCACTAGCGGGTAGGGCTTCTGAGAGTGGTTTTCTCCGTGGAGCTACATTGGGGGCCATTGCTGGGGCTATAATATCTGTTGAGGTGTTAGAAGCTTCCCGTGCCTACTGGTGTTTAGAGCAAACTGGTTCAAGGAGCTCATCATCCATGGCAGATTTCATAGAGCAACTTGTTCGTGGGAGGCTTGTACAGGAACAATTTACACCAGCTATACTAACTGCTTACAATTGGCAGGTTGGGGCTGCTAATACAGGCTATGATGAGATTCCTGAGGTTCATAGCTTAGTTTCGCCTAGAGGACTGTCTGGGGATTCATTGAAGAAGTTACCACACCATGTTATCTTAAAGGACATGAAGCCGGAGAATCTCTGCTGCACAATATGTTTGCAGGATATTGAAGTAGGGGAAGTCGCGAGGAGCTTACCCCGATGTGGCCATTCATTTCACTTGAACTGTGTGGACCGGTGGCTTGTCAAGAATGATTCATGTCCTGTGTGCAGACAATATGTATAG 642 0.4704 MEAEEIERVGRFHFLSKLILSAISGALTGCFAIAGAITGAVAGALAGRASESGFLRGATLGAIAGAIISVEVLEASRAYWCLEQTGSRSSSSMADFIEQLVRGRLVQEQFTPAILTAYNWQVGAANTGYDEIPEVHSLVSPRGLSGDSLKKLPHHVILKDMKPENLCCTICLQDIEVGEVARSLPRCGHSFHLNCVDRWLVKNDSCPVCRQYV 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr8g00002 213 SMART ring_2 168 209 IPR001841 -
Accr8g00002 213 SUPERFAMILY RING/U-box 149 213 - -
Accr8g00002 213 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Accr8g00002 213 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 5 212 IPR044523 -
Accr8g00002 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 213 IPR013083 -
Accr8g00002 213 Pfam Ring finger domain 168 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr8g00002 Accr-Chr8 21201 23492 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr8g00002 1 213 C3H Transcription Factor Family AT1G74410 56.542 1.96e-77 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr8g00002 - - gmx:100800105 310.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr8g00002 8 21201 23492 Accr8g00002 8 21201 23492 ECH