Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g02028 ATGGCTTCAGTGGGATCGTCCTATTGGTGCTACAGATGCAATCAGTTTGTTAGGGTTAGAATTGGGGCTGAAGAGACCTTGCTTTGCCCTGATTGTGGGTCTGGTTTCATAGAAGAAATCAGGACTCGTACTCACTCTCCTTTCCATCGATTCCCTTCACCATCAATGTACGCCGACGATGAGTCTATCTCCGAGCAAGGAGCCAGCCCAAGGATCCGCCGTGGTCCAAGGAACGCCGGCGATCGATCCCCTTTTAACCCCGTTATCGTCCTTAGTGGACCCGCCGATGGCGGTGGAAATGAAGGGGTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCGCTTCCTGCAAGTGTCACAGAATTCTTAATGGGTGCTGGTTTTGACCACCTTCTTGACCAGTTGACTCACTTAGAAGTCACAGGAATCGGACGATTACATCAAACTCCGGCATCAAAATCTGCAATTGAGTCTATGCCCATCGTCAAGATTGTTGCCACACATGTTTCGGCGGAATCACATTGTGCAGTTTGTAAGGAACCCTTCGAGCTTGACTCGGATGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCTGATTGTATCCTTCCGTGGCTTTCAATTCGTAATTCCTGTCCAGTTTGTCGCCTTGAGCTACCTACTGAGATGCGTGGGAGTAGTACTAGCAGTGGCATAAACTCCCCTGTGTCTGACGGTGGAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTACCTGGTGGTGGTTTTGCTGTAGGAAGGTTCACCGGTGGAAGAAGAGCTGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTTGGGGTTCCACGGAGGATATCTTGGGAAACCAGTGTGAGGAGATCAAGGGAATCTCGGGGATTAGGTAATGCTTTCCGAAACTTCTTCTCACACTTTGGGTGGCTTAGGACTTCCTTTTCTCGTTCTTCAAGAACTGATTCAAATGTGAGAGGAAGAACAAGATCTAATACATTATTATCTAGATTCTCAAGAAGGCGCAACTAG 1098 0.4727 MASVGSSYWCYRCNQFVRVRIGAEETLLCPDCGSGFIEEIRTRTHSPFHRFPSPSMYADDESISEQGASPRIRRGPRNAGDRSPFNPVIVLSGPADGGGNEGVGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLHQTPASKSAIESMPIVKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRLELPTEMRGSSTSSGINSPVSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWETSVRRSRESRGLGNAFRNFFSHFGWLRTSFSRSSRTDSNVRGRTRSNTLLSRFSRRRN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g02028 365 Pfam Protein of unknown function (DUF1117) 256 359 IPR010543 -
Accr7g02028 365 FunFam E3 ubiquitin-protein ligase RING1-like 147 232 - -
Accr7g02028 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 151 232 IPR013083 -
Accr7g02028 365 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Accr7g02028 365 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 83 230 - -
Accr7g02028 365 Pfam Ring finger domain 184 226 IPR001841 -
Accr7g02028 365 MobiDBLite consensus disorder prediction 48 85 - -
Accr7g02028 365 SMART ring_2 185 225 IPR001841 -
Accr7g02028 365 MobiDBLite consensus disorder prediction 340 356 - -
Accr7g02028 365 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Accr7g02028 365 SUPERFAMILY RING/U-box 165 232 - -
Accr7g02028 365 CDD RING-H2_RNF126-like 185 226 - -
Accr7g02028 365 Pfam zinc-ribbon 7 40 IPR039525 GO:0061630
Accr7g02028 365 MobiDBLite consensus disorder prediction 340 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g02028 Accr-Chr7 53021367 53022464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g02028 124 234 C3H Transcription Factor Family AT5G01980 45.045 2.58e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g02028 K11982 - qsa:O6P43_016745 544.273