Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01888 ATGGAAATGGCTTCCAGTCCGCGCACCGTTGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCCGGTGTTGTTCGTGCTCTGACTCAAGATGTGGATGAATTTTACAGATTCTGTGATCCAGAAAAGGAGAATTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCAGCTCTCGGAATCAATTTTGCTAGGGATGGCATGATGCGCAGGGACTGGCTTTCTCTTGTTGCTGTTCACAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTCGGGGCCCGTCTCAACCGTAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACCGTCTTTGAAGTTGTGACTGAGAGAAAGGCTATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCCAGGGGAAGCTCCAAGAGATCACTTGATGGGCTAGTTAAAGGCAATCCCAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAATGCCGATGAATTTTGGATTGGCTGCGATGTCTGCGAGAGGTGGTTTCATGGGAAATGTGTGAAGATCACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCTTGCATGAAGCGGGGCAAGCCCTAG 717 0.4798 MEMASSPRTVEEIFKDYSARRAGVVRALTQDVDEFYRFCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMMRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAIKDKPTVDSGSKSRGSSKRSLDGLVKGNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMKRGKP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01888 238 Pfam PHD-finger 186 234 IPR019787 -
Accr7g01888 238 CDD PHD_AL_plant 185 235 IPR044104 -
Accr7g01888 238 PANTHER CPG BINDING PROTEIN 6 235 IPR045104 GO:0006355|GO:0042393
Accr7g01888 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 234 IPR013083 -
Accr7g01888 238 SUPERFAMILY FYVE/PHD zinc finger 174 236 IPR011011 -
Accr7g01888 238 SMART PHD_3 185 233 IPR001965 -
Accr7g01888 238 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Accr7g01888 238 MobiDBLite consensus disorder prediction 141 176 - -
Accr7g01888 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Accr7g01888 238 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Accr7g01888 238 FunFam PHD finger alfin-like protein 178 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01888 Accr-Chr7 50565032 50567687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01888 4 237 Alfin-like Transcription Factor Family AT5G05610 77.119 1.03e-118 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Accr7g01888 Alfin 2e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01888 K26274 - cave:132191911 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr7g01888 7 50565032 50567687 Accr6g01720 6 52056587 52057051 CCT