Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01887 ATGGAAATGGCTTCCAGTCCGCGCACCGTTGAGGAGATCTTCAAGGATTATAGTGCTCGAAGAGCCGGTGTTGTTCGTGCTCTGACTCAAGAAAAGGAGAATTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCAGCTCTCGGAATCAATTTTGCTAGGGATGGCATGATGCGCAGGGACTGGCTTTCTCTTGTTGCTGTTCACAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTCGGGGCCCGTCTCAACCGTAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACCGTCTTTGAAGTTGTGACTGAGAGAAAGGCTATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCCAGGGGAAGCTCCAAGAGATCACTTGATGGGCTAGTTAAAGGCAATCCCAAGTTTGCAGATGAGGGTTATGAGGAGGATGAAGATGAGCATAGTGAAACCCTTTGTGGGAGCTGTGGTGGAAACTACAATGCCGATGAATTTTGGATTGGCTGCGATGTCTGCGAGAGGTGGTTTCATGGGAAATGTGTGAAGATCACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCTTGCATGAAGCGGGGCAAGCCCTAG 684 0.4854 MEMASSPRTVEEIFKDYSARRAGVVRALTQEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMMRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAIKDKPTVDSGSKSRGSSKRSLDGLVKGNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMKRGKP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01887 227 MobiDBLite consensus disorder prediction 130 165 - -
Accr7g01887 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 223 IPR013083 -
Accr7g01887 227 SMART PHD_3 174 222 IPR001965 -
Accr7g01887 227 Pfam PHD-finger 175 223 IPR019787 -
Accr7g01887 227 SUPERFAMILY FYVE/PHD zinc finger 163 225 IPR011011 -
Accr7g01887 227 ProSitePatterns Zinc finger PHD-type signature. 175 221 IPR019786 -
Accr7g01887 227 CDD PHD_AL_plant 174 224 IPR044104 -
Accr7g01887 227 Pfam Alfin 9 123 IPR021998 GO:0006355|GO:0042393
Accr7g01887 227 ProSiteProfiles Zinc finger PHD-type profile. 172 224 IPR019787 -
Accr7g01887 227 PANTHER CPG BINDING PROTEIN 6 224 IPR045104 GO:0006355|GO:0042393
Accr7g01887 227 FunFam PHD finger alfin-like protein 167 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01887 Accr-Chr7 50565032 50567687 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01887 4 226 Alfin-like Transcription Factor Family AT5G05610 73.729 6.31e-108 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Accr7g01887 Alfin 9.4e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01887 K26274 - qsa:O6P43_026231 408.297