Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01502 ATGGCAAAATCTGGCGTGGTGGCGGTGGACTCTGATCCGGCGGCGGCGACGAAGTTGTTGGAGTTGAAGAAGGAGTTGAAAAGATTGGTGAATTCCATCGTCGACGATGACGATTGCAGAATCCAAACCATTGATCAAGCTAGGGAAGTTCTTTCTTCTCTTAAGGACCTCAAGCTTCGAAAGAAGTCATCGTCATCGTCATCGCCATCTTCACAATCTTCGGATTTAAAGCTAAACAGAAATTCTGGTTTTCCGGAAGAATTTAAGTGCCCTCTTTCTAAGGAGTTGATGAGAGATCCTGTCATTGTGGCTTCTGGAAAGACATATGATAGGCCCTTTATTCAAAAATGGCTTAAAGATGGGAACAGAACTTGTCCTGAAACACAACAAGTCCTCTCACACACTGTCCTCACTCCAAATCACCTCATAAGGGAGATGATAGAACAATGGTCCAAGAGCCATGGGGTGGAATTATCCAATCAGCTTCACTATATTTACAATGAGGAAGACGTAATAACAAACGCAGATTGTGATCATTTCCATTCTCTGATTGAGAAATTGTCATCATCATCACTTTCTGAGCAGAAAACAGCCGCGAAGCAGCTCCGGTTATTGACAAAGAAGACGCCTTTGTACAGAACACTCTTTGGCAAGACTCCACAAGCTATAGCTGAGATTCTCAAACCAATCTCTGTAAGCGAGTCTTTCAACAACATTCATCCTGACCTCCAAGAAGACGTGATCACAACACTTTTGAACATCTCAATCCACGACAACAACAAGAAGCTTGTTGCAGAAACTCCCTCGGTGATTCCAGTCCTTGTCAAAGCCTTAAAATCAGGAACTATAGAAACCAGAAGCAATTCTGCAGCTACCCTTTTCACTTTATCTGCTCTAGACTCGAACAAGGAGCTCATAGGGGAATCCGGCGCTTTAAAGCCATTAATTGACCTCTTAGAAGAAGGCCACCCCTTAGCTATGAAAGATGTTGCTTCAGCAATTTTCACCTTGTGTGTGGTTCTTGAGAACAAGGCGAGAGCGGTGAGGGAAGGGCTAGTAAGTGTCATACTGAAGAAGATCTCAAGCCGGGTCTGGGTCGATGAATTGCTCACGATCCTCGCACTGCTCTCAAGTCATCAAAAGGCTGTTCAGGACATGGTAGATCTTGGGGCTGTTCCCAACTTGCTGAGCATCATGAGGGAGAGCAAATGCGAACGAAGCAAGGAGAATTGCATAGCGGTTCTTCAAACTATATGCCAGTATGACAGAGCAAAGCTGAAGGAAATCAAAGAAGAGGAGATTTCCTTCAGAACTATCACTGATCTTGCATTGAATGGAACTTCAAGGGCTAAGAGGAAGGCTAGTGGAATTCTTGAGAGACTGAATAGGGTTGTTAATATTACACACACTGCATAA 1416 0.44 MAKSGVVAVDSDPAAATKLLELKKELKRLVNSIVDDDDCRIQTIDQAREVLSSLKDLKLRKKSSSSSSPSSQSSDLKLNRNSGFPEEFKCPLSKELMRDPVIVASGKTYDRPFIQKWLKDGNRTCPETQQVLSHTVLTPNHLIREMIEQWSKSHGVELSNQLHYIYNEEDVITNADCDHFHSLIEKLSSSSLSEQKTAAKQLRLLTKKTPLYRTLFGKTPQAIAEILKPISVSESFNNIHPDLQEDVITTLLNISIHDNNKKLVAETPSVIPVLVKALKSGTIETRSNSAATLFTLSALDSNKELIGESGALKPLIDLLEEGHPLAMKDVASAIFTLCVVLENKARAVREGLVSVILKKISSRVWVDELLTILALLSSHQKAVQDMVDLGAVPNLLSIMRESKCERSKENCIAVLQTICQYDRAKLKEIKEEEISFRTITDLALNGTSRAKRKASGILERLNRVVNITHTA 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01502 471 ProSiteProfiles U-box domain profile. 83 157 IPR003613 GO:0004842|GO:0016567
Accr7g01502 471 MobiDBLite consensus disorder prediction 61 82 - -
Accr7g01502 471 Pfam U-box domain 85 154 IPR003613 GO:0004842|GO:0016567
Accr7g01502 471 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 157 IPR013083 -
Accr7g01502 471 SUPERFAMILY RING/U-box 83 158 - -
Accr7g01502 471 SMART Ubox_2 87 150 IPR003613 GO:0004842|GO:0016567
Accr7g01502 471 PANTHER U BOX DOMAIN-CONTAINING 23 461 - -
Accr7g01502 471 Gene3D - 176 463 IPR011989 -
Accr7g01502 471 MobiDBLite consensus disorder prediction 63 80 - -
Accr7g01502 471 SUPERFAMILY ARM repeat 167 461 IPR016024 -
Accr7g01502 471 CDD RING-Ubox_PUB 85 137 IPR045210 -
Accr7g01502 471 SMART arm_5 379 420 IPR000225 GO:0005515
Accr7g01502 471 SMART arm_5 299 339 IPR000225 GO:0005515
Accr7g01502 471 SMART arm_5 257 298 IPR000225 GO:0005515
Accr7g01502 471 FunFam RING-type E3 ubiquitin transferase 83 157 - -
Accr7g01502 471 FunFam RING-type E3 ubiquitin transferase 170 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01502 Accr-Chr7 41574859 41577624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01502 146 471 U-box Gene Family AT3G07360 58.182 1.26e-127 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01502 - - pcin:129287872 610.912