Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01501 ATGGGGCCAAATGCAGGTTCTTTATCGGCGGTGGTCAAACAGGCAGAGCAACTTCGAATAAACGGAAATAATTACTTCAAGAAAGATCGGTTTGGAGCTGCTATCGATGCTTATACGGAGGCAATTACTTTAAGGCCCGATAATCCGGTTTATTTCACGAATCGAGCTCTATGCCATCTCAAGCGGAATAACTGGGAAAGAGTGGAGGAAGACTGTCGGAAAGCTATTCATCTTAATCAGAAGTCAGTTAAGGCCCACTATATGTTGGGACTTGCTTTGCTGCAGAGAGAAGAATATGCCAAGGGAATAACAGAATTAGAGAAGGCTTTGGATCTTGGGAGGGGAGCCAATCCTAAGGGCTATATGGTAGAAGAGATCTGGCAGGAGCTAGCAAAAGCAAAATACCAAGAATGGGAGCGTTCATCCACCAAGCGATCATGGGCATGGCAGAGCTTGAAAGAAGCTTGCGAGTCTGCTCTAAAGGAAAAGCATGTACATGACATCTCCCAGGAAGAAGGCTTTCTAGATGAACTTCCAACCAGCCCGTCTGGACAGCTAGCGGCTTTAGGAAGTGTGTTCAGTAAAGCTGCAGAGGATGATACGCCTACTGAGGTGCCAGATTACCTTTGCTGTAGAATTACACTTGATATTTTCCGGGATCCTGTCATCACTCCAAGTGGTCTTACATATGAGAGGGCAGTGATTCTTGACCATCTTGACAAGGTGGGTAAGTTTGATCCAGTGACCCGAGAACCACTTAATCGATCCCAGTTAGTATCAAACTTGGCCATAAAGGAGGCAGTCCAGGCATTCTTAGACAAACATGGATGGGCCTACAAGATAGATTAA 849 0.4558 MGPNAGSLSAVVKQAEQLRINGNNYFKKDRFGAAIDAYTEAITLRPDNPVYFTNRALCHLKRNNWERVEEDCRKAIHLNQKSVKAHYMLGLALLQREEYAKGITELEKALDLGRGANPKGYMVEEIWQELAKAKYQEWERSSTKRSWAWQSLKEACESALKEKHVHDISQEEGFLDELPTSPSGQLAALGSVFSKAAEDDTPTEVPDYLCCRITLDIFRDPVITPSGLTYERAVILDHLDKVGKFDPVTREPLNRSQLVSNLAIKEAVQAFLDKHGWAYKID 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01501 282 Pfam Anaphase-promoting complex, cyclosome, subunit 3 45 109 - -
Accr7g01501 282 SUPERFAMILY RING/U-box 196 279 - -
Accr7g01501 282 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 281 IPR013083 -
Accr7g01501 282 ProSiteProfiles U-box domain profile. 204 278 IPR003613 GO:0004842|GO:0016567
Accr7g01501 282 ProSiteProfiles TPR repeat profile. 15 48 IPR019734 GO:0005515
Accr7g01501 282 Gene3D Tetratricopeptide repeat domain 10 145 IPR011990 GO:0005515
Accr7g01501 282 Pfam U-box domain 205 277 IPR003613 GO:0004842|GO:0016567
Accr7g01501 282 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 9 280 IPR045200 GO:0000209|GO:0061630
Accr7g01501 282 SUPERFAMILY TPR-like 12 133 IPR011990 GO:0005515
Accr7g01501 282 SMART tpr_5 49 82 IPR019734 GO:0005515
Accr7g01501 282 SMART tpr_5 15 48 IPR019734 GO:0005515
Accr7g01501 282 SMART tpr_5 83 116 IPR019734 GO:0005515
Accr7g01501 282 SMART Ubox_2 208 271 IPR003613 GO:0004842|GO:0016567
Accr7g01501 282 CDD RING-Ubox_CHIP 205 275 IPR045202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01501 Accr-Chr7 41552615 41557370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01501 15 281 U-box Gene Family AT3G07370 66.292 2.05e-132 374
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01501 K09561 - qsa:O6P43_016950 454.136