Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01415 ATGTCTTCCTTCTTCAGAGTCCTCGTTAGGGATTATACTGCTAAACTGCAAATCCCTCCCCTGTTTGTCTCCAGATTTTCTAGTCTTACACCAAAAACAGTAGTGCTTTTTTGTTCTTCAGAAAGATCATGGATGGTTGATATTGAGGAAGAAGAAGACAAACAATTATATTTCAGAAGAGGTTGGAACACATTTGTGCAAGATAATGATTTAGAATTTGGGGATTTTATAGTTTTCAAATTTGATGGGAATTCAACATTCAAAGCTAAAATCTATGAAAAATCTTACCTCAGAAGAAAAAAAACCTCAATGTCAGTATCTTCTTTCTTCAAGATCATCATCAATGAAGAATATACTACCAAACTGCGAATCCCTTTGTTGTTCGTCTCCAGATATTCTAGTCTAGTCCCAAAAACAGTAAAATTTATCAGGTCTTATTCTTCAGACAGATCATGGAAGGTTGATATTGTGGAAGAAGATGACAAAAGGTTATATTATAAAAATGGCTGGAGTACATTTGTAGAAGATAATGCTGTAGAGATTGCATCTTTTATAGTTTTCAAATTTGTTGGGGATTCAACTTTTAAAGTTAAGATCTATGGAAAGTGTGCCTGTGAGAAGGAGCTTGAGAATGAGTCATGTGTCAACCATGATTACTGCATACAGCATCATAATAAAAAAATACCAACTCTAGATCATCAAGTAACTAAGAGAGAAATAGATCCGATTGATGTAAGATACGTAACGATGGAGACAGTTGATCATGGCGATTCTAACCAAGAAATTGTGGCTCCCCAGAAAGAAGTTGAATCTCATGTCCCTATCGAGAAAACTGACAATGGGTATGAGTCGATTGAAGGCCCTGATTTGGACTCTAAGAAGAATCCTTCATTCAAAATTCTTCTGCAACAAGCCTATGCAAAGAAGGGTGTCATGTGCTTTCCAACAGAGTTTTTCCATAAGCATATGAAGAATAAGAGACAAGAGGTAGAGATGGAGACAGTGGAAGGAGTGTGGACTGTGAGCTTACTCCCCCACATGAAAAGGACAAGGACATTCGCCAGATTAAGCAAAGGCTGGTCGGAATTCGCGAAAGCCAACCATTTCAAAACCGGAGAGACTCTTGTTTTCGAACTGACTCGAAAAGGTGACTGCCCCAAGTTTGTCATCAACAGGCAATGA 1182 0.3773 MSSFFRVLVRDYTAKLQIPPLFVSRFSSLTPKTVVLFCSSERSWMVDIEEEEDKQLYFRRGWNTFVQDNDLEFGDFIVFKFDGNSTFKAKIYEKSYLRRKKTSMSVSSFFKIIINEEYTTKLRIPLLFVSRYSSLVPKTVKFIRSYSSDRSWKVDIVEEDDKRLYYKNGWSTFVEDNAVEIASFIVFKFVGDSTFKVKIYGKCACEKELENESCVNHDYCIQHHNKKIPTLDHQVTKREIDPIDVRYVTMETVDHGDSNQEIVAPQKEVESHVPIEKTDNGYESIEGPDLDSKKNPSFKILLQQAYAKKGVMCFPTEFFHKHMKNKRQEVEMETVEGVWTVSLLPHMKRTRTFARLSKGWSEFAKANHFKTGETLVFELTRKGDCPKFVINRQ 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01415 393 SUPERFAMILY DNA-binding pseudobarrel domain 104 204 IPR015300 -
Accr7g01415 393 Pfam B3 DNA binding domain 298 389 IPR003340 GO:0003677
Accr7g01415 393 Pfam B3 DNA binding domain 109 200 IPR003340 GO:0003677
Accr7g01415 393 Pfam B3 DNA binding domain 12 92 IPR003340 GO:0003677
Accr7g01415 393 ProSiteProfiles B3 DNA-binding domain profile. 1 95 IPR003340 GO:0003677
Accr7g01415 393 SUPERFAMILY DNA-binding pseudobarrel domain 293 389 IPR015300 -
Accr7g01415 393 Gene3D - 286 392 IPR015300 -
Accr7g01415 393 CDD B3_DNA 3 92 IPR003340 GO:0003677
Accr7g01415 393 Gene3D - 101 205 IPR015300 -
Accr7g01415 393 Gene3D - 1 96 IPR015300 -
Accr7g01415 393 SUPERFAMILY DNA-binding pseudobarrel domain 3 95 IPR015300 -
Accr7g01415 393 PANTHER B3 DOMAIN-CONTAINING 3 99 - -
Accr7g01415 393 ProSiteProfiles B3 DNA-binding domain profile. 297 393 IPR003340 GO:0003677
Accr7g01415 393 SMART B3_2 4 95 IPR003340 GO:0003677
Accr7g01415 393 SMART B3_2 109 203 IPR003340 GO:0003677
Accr7g01415 393 SMART B3_2 298 392 IPR003340 GO:0003677
Accr7g01415 393 CDD B3_DNA 108 200 IPR003340 GO:0003677
Accr7g01415 393 ProSiteProfiles B3 DNA-binding domain profile. 107 203 IPR003340 GO:0003677
Accr7g01415 393 CDD B3_DNA 298 392 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01415 Accr-Chr7 38998401 39001169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01415 109 209 B3 DNA Binding Superfamily AT5G66980 29.808 3.74e-10 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr7g01415 B3 9.1e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01415 - - pcin:129291410 553.132