Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01394 ATGGGGAGAGGAAGATCGGCGACAAAATTGATAGAGAACGAGAAATCGAGAAAGGCAACATTTCAGAAGAGGAAGAACGGAATTATGAAGAAAGCTCATGAGCTTTCTACACTATGTGGAGTTGATTGTTGCTTGATCTTCTACAGCAACTCTATCAACGACCTTCCTGAGATTTGGCCTCGAGACCGCATACAGGTGCGAAGAATGATTGAGAAGTACAAGGCAAAGAAAGCTTAG 237 0.4304 MGRGRSATKLIENEKSRKATFQKRKNGIMKKAHELSTLCGVDCCLIFYSNSINDLPEIWPRDRIQVRRMIEKYKAKKA 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01394 78 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
Accr7g01394 78 SUPERFAMILY SRF-like 1 75 IPR036879 GO:0003677|GO:0046983
Accr7g01394 78 Gene3D - 13 78 IPR036879 GO:0003677|GO:0046983
Accr7g01394 78 CDD MADS 2 60 - -
Accr7g01394 78 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
Accr7g01394 78 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 50 IPR002100 GO:0003677|GO:0046983
Accr7g01394 78 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Accr7g01394 78 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Accr7g01394 78 PANTHER MADS BOX PROTEIN 8 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01394 Accr-Chr7 38051409 38052246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01394 1 74 Type I MADS-box Gene Family AT3G05860 44.595 5.74e-17 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Accr7g01394 SRF-TF 1.2e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01394 - - pcin:129285084 123.635