Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01357 ATGAAGCTCGTCGTGAAGACCTTGAAAGGAAGCCATTTCGAAATCAAAGTTCAACTTTCAGACACTGTCATGGCTGTCAAGAAGAATATAGAAGACGTACAAGGAAAAGATAATTACCCTTGCGGACAGCAATTGCTTATTTTTAATGGCAAGGTTTTGAAAGATGAAACTACGATGGCGGAGAATCAGGTCTCTGAAGAAGGATTTCTTGTTGTGATGCTTAGCAAGAGTAAAACTTCAAGTTCAGCTGGGGCTTCATCCGTTCAGCCTGCCAACAATCCATCTACTACTGTACCAACCACAAATTCCACTCCTACACCTGAATCTCTAGTACAAAGTACTCAGGCTACAACAAATAGTTCTTCTGCGGTAAATGTCACAGCTACAAATGTGCCTGTGGATACGTATGGTCAGGCTGCTTCAAATCTAGCTGTCGGTGGTGATCTTGAGCGGACTATTCAACAAATCATGGACATGGGAGGTGGCAACTGGGACAGAGAGACAGTTATTCGTGCTCTTCAGGCAGCTTATAATAACCCAGAGCGTGCTGTGGATTACTTGTATTCTGGAATCCCTGAAGTAGCAGAGGTTGCCATACCAGTTCCTCATTTCCAAGCCAGTCAGACAACTGAAGCAGGTAGGACCACTGCTGGAGGTGTTTCTGGGGCACCTAATACGTCTCCGTTAAACATGTTTCCACAGGAGACAATTTCTGGTGCTGGAGCTGGACTTGGATCTCTGGAATTCCTTAGAAACAACCCCCAGTTTCAAGCATTGCGATCAATGGTGCATTCTAATCCTCAAATTCTGCAGCCTGTACTTCAAGAGCTTGGGAAGCAGAATCCTCATCTATTAAGACTAATTCAGGAGCATCATGCTGAATTTCTCCAGTTAATGAATGAACCCATGGAAGGCTCTGAAGGTGACATATTTGACCAGCCTGAGCCAGACATGCCTCATTCCATCAACGTGACGCCAGCGGAACAGGAGGCAATTGGAAGGCTTGAAGCAATGGGATTTGATAGAGCCTCAGTGATAGAGGCATTTTTGGCATGTGACCGTGATGAGCAATTGGCAGCCAACTACTTACTGGAGAATGCTGGAGATTTTGATGATTGA 1119 0.4495 MKLVVKTLKGSHFEIKVQLSDTVMAVKKNIEDVQGKDNYPCGQQLLIFNGKVLKDETTMAENQVSEEGFLVVMLSKSKTSSSAGASSVQPANNPSTTVPTTNSTPTPESLVQSTQATTNSSSAVNVTATNVPVDTYGQAASNLAVGGDLERTIQQIMDMGGGNWDRETVIRALQAAYNNPERAVDYLYSGIPEVAEVAIPVPHFQASQTTEAGRTTAGGVSGAPNTSPLNMFPQETISGAGAGLGSLEFLRNNPQFQALRSMVHSNPQILQPVLQELGKQNPHLLRLIQEHHAEFLQLMNEPMEGSEGDIFDQPEPDMPHSINVTPAEQEAIGRLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFDD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01357 372 SMART ubq_7 1 75 IPR000626 GO:0005515
Accr7g01357 372 FunFam UV excision repair protein RAD23 homolog 319 367 - -
Accr7g01357 372 Gene3D - 1 80 - -
Accr7g01357 372 SUPERFAMILY XPC-binding domain 244 310 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr7g01357 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 150 190 IPR015940 -
Accr7g01357 372 SUPERFAMILY Ubiquitin-like 1 84 IPR029071 -
Accr7g01357 372 Pfam Ubiquitin family 4 76 IPR000626 GO:0005515
Accr7g01357 372 Pfam UBA/TS-N domain 328 363 IPR015940 -
Accr7g01357 372 Pfam UBA/TS-N domain 150 187 IPR015940 -
Accr7g01357 372 PRINTS DNA repair protein Rad23 signature 273 295 IPR004806 GO:0006289
Accr7g01357 372 PRINTS DNA repair protein Rad23 signature 354 369 IPR004806 GO:0006289
Accr7g01357 372 PRINTS DNA repair protein Rad23 signature 322 338 IPR004806 GO:0006289
Accr7g01357 372 PRINTS DNA repair protein Rad23 signature 339 353 IPR004806 GO:0006289
Accr7g01357 372 MobiDBLite consensus disorder prediction 81 123 - -
Accr7g01357 372 Gene3D - 237 303 IPR036353 GO:0003684|GO:0006289|GO:0043161
Accr7g01357 372 FunFam UV excision repair protein RAD23 B 237 303 - -
Accr7g01357 372 SMART CBM 245 288 IPR006636 -
Accr7g01357 372 CDD Ubl_Rad23 1 74 - -
Accr7g01357 372 Gene3D - 319 367 - -
Accr7g01357 372 SMART uba_6 328 365 IPR015940 -
Accr7g01357 372 SMART uba_6 149 189 IPR015940 -
Accr7g01357 372 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Accr7g01357 372 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 361 - -
Accr7g01357 372 NCBIfam UV excision repair protein Rad23 1 371 IPR004806 GO:0006289
Accr7g01357 372 SUPERFAMILY UBA-like 147 197 IPR009060 GO:0005515
Accr7g01357 372 FunFam UV excision repair protein RAD23 1 80 - -
Accr7g01357 372 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 326 366 IPR015940 -
Accr7g01357 372 SUPERFAMILY UBA-like 306 370 IPR009060 GO:0005515
Accr7g01357 372 Gene3D - 142 192 - -
Accr7g01357 372 FunFam UV excision repair protein RAD23 homolog 142 192 - -
Accr7g01357 372 Pfam XPC-binding domain 247 302 IPR015360 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01357 Accr-Chr7 36317988 36331503 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01357 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 1.29e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01357 K10839 - cave:132187731 549.28