Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01258 ATGCCACCGAGGACGGTGAAGAGAGGGGCTGCATCGGCGGCCCGGAGAGGGGGCAGAGGTGGCCGAGGAACGCCGAAGGCTGCCCAGAATCAGCAGAATCTTGATTCTGCACAAGAGGTTGTGAAGCATGAAGAAAAGCAGGTCGTTGAGGAGAAGCCCGTTGTCTTGGAGAAGCCTGTCGTTGAGGAGAAACACGTTGAGGAGAAACAAGTAGGTATTGATATGAATCAGATGGCTTTTGATATTAACCAAGTAGCTTCAGAGGCCGAAGAAGCGAATCTCGTCACAAATGGGTCTGCTGCTGTGAAAAACGACGAAGAGGAGGTTAAGGAGTCCATAGATGAATATGAGAAAGATGAACGCTTAGATCTGGAGGATCATGATCCAGAGTATGAAACTGAGGAGTATGGTGGAGTTGATTATGATGAGAAGGAAATTGAGCATGATGATGTTCAAGAGGTAGGAGATGAGATAGAGGAAGAACCTGATGAGAATTTAGGTGAAGAAGAGGGTGATATAGTTGAGGAGGAGGTGGAAGACGTTCATGGAGAACTTGAGGGTGAAGAGGATGATGAACATCCTGGAGAGGAGCATGAGCATGAGCATGAGCATACGGAGAATGCTGATGTTGAAGAAGATGAACACCATGAAGGTTTGAAAGAGAGGAGAAAGCGCAAGGAATTTGAAGTATTTGTTGGAGGCTTAGATAAGGATGCTACGGAGGATGATCTGAGGAAGGTTTTTAGTGCAGTTGGTGTGGTTACTGAAGTGAGGCTTATGATGAATCCTCAGACTGAAAAGAATAAGGGTTTTGCATTCTTGCGGTTTGCAACTGTGGAACAAGCTAAACGAGCTGTAACAGAGCTAAAAAATCCAGTGATTAATGGAAAACAATGTGGGGTAACCCCCAGTCAGGACAGTGACACCCTCTTTTTGGGTAACATATGCAAGACATGGACAAAGGAAGCTTTAAAGGAGAAGTTAAAGCACTATGGAGTTGACAATGTGGAGGATCTGACTTTAGTAGAAGATAGTAATAATGAGGGAATGAACCGTGGATTTGCCTTTTTAGAATTTTCATCTCGGTCAGATGCTATGGATGCCTTTAAGCGATTGCAGAAGAGAGATGTTGTGTTTGGAGTTGATAGGCCTGCAAAGGTTTCCTTTGCAGATTCGTTTATTGACCCGGGTGATGAGATTATGGCGCAGGTCAAAACTGTATTTATTGATGGTTTGCCTCCATCATGGGATGAGGATCGTGTGCGGGGTCTTCTTAAGAGATTTGGAGCGATTGAGAAGATTGAGCTTGCTAGAAACATGCCTTCTGCTAAGAGGAAGGACTTTGGATTTGTTACATTTGATACCCATGATGCTGCAGTGACATGTGCTAAAAGCATTAATAATTCTGAGATTGGTGAAGGAGACAGTAAGGCAAAAGTTAGGGCAAGATTGTCGAGACCACTTCAGAGGGGCCATGGAAAACATGGTGGTCGAGGGGATTTTCGTTCTAGTCGTGCCTCAGGAAGAGTCACAAGGCCTTCATGGAGTCGTCCACCACCTCGTAGTTTACCTGCCCGTGGGGTACGGGGCGTTAGTAGTCGTGTTCCTCCAGTCAGGCCTGTTAGTGTAAGAGATAGACGTCCAACCATGCCTATGACAGTAAGAGCTAGGCCAGTGGCTCCTCCAGCAAGATCCTATGATAGGAGACAGGCTGTTCCTGCATATCCAAAGAGTAGCATGAAGAGAGATTATGGTCGGCGTGAGGATTTGCCACCACCAAGAAATAGAGTAGCTGCAGATTACAGCTCTCGGGTAGCCTCTGAGAGACGCCCATCTTACAGGGATTATCCAGCTCGTGGCCCTACCTACTCTGAGCTTCCTAGAAGTACTTCATCTCGTGTGCCTCCTAGGAGGGGTTATGTGGATGATGGGTATGGTCAAAGGTTTGAGAGGCCTCCTCCGCCGCTGCCCCCACATCCAAGTTACCGTGAAGGACGCCCTCGTGACTATGATACTCTCTCTGGCTCAAAACGCCAATATGCTGCCATTGATGATGGTCCACCACGATATGCAGACAGTGGTGCTCGTCAATCTAGAGCTCGATTGGACTATGACTATGGTGGTAGTACTTCACAGTATGGCGATGGTTATGGGGATAGACTTGGAAGATCTAGTATGGGCTATAGTGGTGGCAGGAGTTCTATGTCAAGTCAAGACTCACATGGGATGTATAGCAGTCGTCAAGGCATGAGTTACAGTGGAGGTTCTTTTGGCAGCAGTGATGTTGGTGGTTTGTACTCCTCCAGTTATGGTGGTGATTATATGTCTCGTGGAAATGATGTTGGTGGTGGTTCATACTCATCACCGTATCCTGGCAGAGGTGTGGGTGGTAGTGGCAGTTACATGGGTGGTGGTAGTGGGTCTGGGTCTTATTATTGA 2439 0.4695 MPPRTVKRGAASAARRGGRGGRGTPKAAQNQQNLDSAQEVVKHEEKQVVEEKPVVLEKPVVEEKHVEEKQVGIDMNQMAFDINQVASEAEEANLVTNGSAAVKNDEEEVKESIDEYEKDERLDLEDHDPEYETEEYGGVDYDEKEIEHDDVQEVGDEIEEEPDENLGEEEGDIVEEEVEDVHGELEGEEDDEHPGEEHEHEHEHTENADVEEDEHHEGLKERRKRKEFEVFVGGLDKDATEDDLRKVFSAVGVVTEVRLMMNPQTEKNKGFAFLRFATVEQAKRAVTELKNPVINGKQCGVTPSQDSDTLFLGNICKTWTKEALKEKLKHYGVDNVEDLTLVEDSNNEGMNRGFAFLEFSSRSDAMDAFKRLQKRDVVFGVDRPAKVSFADSFIDPGDEIMAQVKTVFIDGLPPSWDEDRVRGLLKRFGAIEKIELARNMPSAKRKDFGFVTFDTHDAAVTCAKSINNSEIGEGDSKAKVRARLSRPLQRGHGKHGGRGDFRSSRASGRVTRPSWSRPPPRSLPARGVRGVSSRVPPVRPVSVRDRRPTMPMTVRARPVAPPARSYDRRQAVPAYPKSSMKRDYGRREDLPPPRNRVAADYSSRVASERRPSYRDYPARGPTYSELPRSTSSRVPPRRGYVDDGYGQRFERPPPPLPPHPSYREGRPRDYDTLSGSKRQYAAIDDGPPRYADSGARQSRARLDYDYGGSTSQYGDGYGDRLGRSSMGYSGGRSSMSSQDSHGMYSSRQGMSYSGGSFGSSDVGGLYSSSYGGDYMSRGNDVGGGSYSSPYPGRGVGGSGSYMGGGSGSGSYY 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01258 812 CDD RRM_SF 230 301 - -
Accr7g01258 812 SUPERFAMILY RNA-binding domain, RBD 224 306 IPR035979 GO:0003676
Accr7g01258 812 MobiDBLite consensus disorder prediction 727 747 - -
Accr7g01258 812 Coils Coil 141 161 - -
Accr7g01258 812 MobiDBLite consensus disorder prediction 126 194 - -
Accr7g01258 812 FunFam Heterogeneous nuclear ribonucleoprotein Q 309 391 - -
Accr7g01258 812 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 23 812 - -
Accr7g01258 812 Gene3D - 169 303 IPR012677 -
Accr7g01258 812 MobiDBLite consensus disorder prediction 1 44 - -
Accr7g01258 812 FunFam Heterogeneous nuclear ribonucleoprotein Q isoform A 157 308 - -
Accr7g01258 812 MobiDBLite consensus disorder prediction 484 747 - -
Accr7g01258 812 MobiDBLite consensus disorder prediction 103 125 - -
Accr7g01258 812 Gene3D - 395 513 IPR012677 -
Accr7g01258 812 MobiDBLite consensus disorder prediction 777 812 - -
Accr7g01258 812 CDD RRM_SF 407 472 - -
Accr7g01258 812 Coils Coil 99 122 - -
Accr7g01258 812 CDD RRM_SF 310 388 - -
Accr7g01258 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 306 IPR000504 GO:0003723
Accr7g01258 812 Gene3D - 308 391 IPR012677 -
Accr7g01258 812 MobiDBLite consensus disorder prediction 580 594 - -
Accr7g01258 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 298 IPR000504 GO:0003723
Accr7g01258 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 376 IPR000504 GO:0003723
Accr7g01258 812 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 407 472 IPR000504 GO:0003723
Accr7g01258 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 405 487 IPR000504 GO:0003723
Accr7g01258 812 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 392 IPR000504 GO:0003723
Accr7g01258 812 MobiDBLite consensus disorder prediction 96 221 - -
Accr7g01258 812 Coils Coil 27 47 - -
Accr7g01258 812 SUPERFAMILY RNA-binding domain, RBD 307 472 IPR035979 GO:0003676
Accr7g01258 812 FunFam RNA recognition water-stress protein1 395 516 - -
Accr7g01258 812 SMART rrm1_1 229 302 IPR000504 GO:0003723
Accr7g01258 812 SMART rrm1_1 406 481 IPR000504 GO:0003723
Accr7g01258 812 SMART rrm1_1 309 388 IPR000504 GO:0003723
Accr7g01258 812 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01258 Accr-Chr7 28815927 28821184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01258 223 486 Eukaryotic Initiation Factors Gene Family AT1G49760 24.080 2.31e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01258 - - gmx:100779340 997.653