Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01218 ATGCCTAGAAAGAGACGTATACATCAATTGAAGCATCCATTTGATTCTCACCCATTTGAAGCAATTCTCCAGGGGTCATGGCAAGCTTTGAGGTACCTAGCAATTGAAAGAGGAACAATGGTCTTACATTTTAAAGATAATAACTATGTGGTTAGGGAGAAAGCTCCTATTTCAGACATTCGGATAAAGTCTAGGAAAGCAACTGTATCAGATTGCTCCAGCTTTTTGAGACCTGGAATTGACATATGTGTACTCTCTTCCTTTCAATCTACTAATGGCTCAGATAGAAAAAGTCCTAATCCTGTGTGGGCTGATGCTAAAATAAGTTCTATACAGAGAAAGCCACATGAACCCGAATGCTTGTGTCAGTATTATGTGAACTTTTATGTTAATCAAGGTTGTATAAGTTCTGAGGTAAGAACTTTGAATAAGGAGGTCAAAGTAGTTGGAATAAATCAAATTTCTATTCTCCAAAGGCTTGGGCATAGTCCTTGTGAAGATCATCACTATCGGTGGGATTCATCTGAGGACTGGCATGCAGTACCACAAACTAAATTGCTTACAGGGAAATTTTTATCTGATATTTCATGGTTAATTGTCTCATCAGTTTTAAAGAAGGTTCCATTTTGTGTGAGATCTGCAGATAACAAAATTGTGTATCAAATCATGGGCAGTGATGATATTAGCTCCCTATTGGATGTTGTAAATTTCAGAATAGACAACAACATGCTAGTACCCATTGTTTCCCAAGTTATTTCATCAGACACTATTAAGGTTGACGATACAGATGACTCCCTTAAAGATAAAGCGATTCCATCTTATAATCCTGAGGGTTTGCGTCGTTCCAAACGCCGGAATGTACAACCGGAGCGCTACCTTGGCTGTGATGAGACTCATGTGTTGGATGTTGGTTTTATTCGTACTAGGCCATACAAGATGGACACTCGAAAAGATGATGTTGAGGATGATGAATTGTCAATGCCATTGTCATCCCTGATTGGTTTGCAAAAATGTTCTGGAGTGAAGGGCAATGACAATGGACTAAAGTCTGATGAGATGAAGTGCTACAACAAACTTAAAGTGTATAAAAGGAGGCCTAAATCTAAGGGGGTAAATTCAGGTGATGCCAATGAGAATGAAACTCAATCTCAACTGGCCATTGTTCCTGTTCCTCTAGAATGTGATCCTATTAACATTGAGCATTTTGATTCCAATGCCAAGGTCTCTAAGCATTACACACAAAGAAATGTTGAATTTCCTTCCAAATATTATCACATGATGGGTAGTCCTGAACCAAAGAGGAATGATATGGATTTGTTAACTTTTGAATCCTATAATTATCCTTCAAAGATTCCCGATCTTGAGGAGATTGATGATATTGCTTCCCGACGTCATTATAATCACAGCATTCCGAAATTGAAGGGGAAGAATTCTTGTGATTTTGATGATTTGCATTTTGAAGGCAAGTGGGAAGGGATAAATTCCAATAAAGCGGTTCAAGGGAGAAAATATCATTCAACAATTTCAAGAGTCAGACAATCTGATGAAGAAAGAACTTATAAAGCTAGGTCCCTAAGTGCAGGTGCCTATAAGGAATTGATAGACTCGTATTTAAAGAATATGAATGCAAAACCAACAAAAGCAGAGCCGCCTATTGCTGAGCAGTGGATACAATTCAAGGAAACAAGTAACTTCGGACAAAAGAGGGAAACAAAGGCATCCTCAGTAGAGGATGAGGAAGAAACTGATGAACTAGATATATTGTGGAGAGAAATGGATGTTTCATTGGCATCAAGTTATGTTGAAGAAGGCACAGAGGGTTCAGGTGCCCCAGGCTTTACCGAGGCATGGGAAAAAACTGATTCGCTTTGTCGCCATGATTATAGAATGAATGAAGAAATTGGGATTTACTGTGTCTTATGTGGAACTGTCAGTACAGAGATTAAAGATGTATTGCCACCCTTTTTGGAACGTTCATGGCACTATGAGGAGAAGCCACACAGTGAAGGTTCAGAACCAGAACCAGAACCAGAACCAAAGGCTGATGAAAATGATGATTTTCATCTTTTGTTGAATGATGCTTTGCCTGATCAACCTATAACTGGAGAAAATGATAATGTATGGGCATTAATTCCTGAACTTAGGTGGAAGTTGCACATCCACCAAAAAAAAGCTTTTGAATTTCTTTGGAAAAATATTGCTGGGTCTATGGACCCGACACTTATGGAAGCAGCATCCAAAAAAAGAGGTGGTTGTGTGATATCTCATGCTCCTGGAGCTGGAAAAACATTCCTTATTATTGCATTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGCGACCATTGGTTCTAGCTCCGAAGACAACACTTTATACATGGTATAAAGAATTTATTAAATGGAAAATTCCTATTCCAGTGTATCTAATTCATGGTCGTAGAACCTACCGAGCATTCAAGCAGAATAAAGTGGTTTTTCACGGTGGTCCAAAGCCTACTGATGATGTCAAGCATATTCTGGATTGCCTAGAAAAGATACAAATGTGGCACGCACACCCAAGTGTTCTAGTCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTTCTCACAGAAAGTACATGGCTAAAGTATTAAGGGAAAGTCCTGGTATTCTTATACTGGATGAAGGGCACAATCCTAGAAGCACAAAATCAAGGTTGAGGAAAGTTTTGATGAAAGTACAGACAGAATTGAGAATATTACTTTCGGGTACATTGTTCCAGAACAACTTCTGTGAATACTTTAACACTCTTTGCTTGGCCAGGCCGAAATTTGCCTATCAAGTGTTGAAAAAACTGGACCCTAAATATAAGAGAAAATTGAAAGGAGCAGGGAAAGCTCGTCATTTAATAGAGGCGCGAGCTAGAAAATTCTTCTTGGATAATATTGCAAAAAAAGTTGACTCAAAGGATGAAAAAGAGCAAATGCAGGGTCTGAACATGTTGAGAAAGATGACCAGTGGTTTTATAGATGTTTATGAAAATGGGAATTCAGAGGATCTTCCTGGTTTACAAATCTATACATTGTTGATGAATACTACTGATATACAGCATGAAATTTTGAAAAAACTCCAGAAGAAAATGTCTGCGTGCAATGGATATCCTTTGGAGTTAGAGCTTTTGATAACCCTTGGATCGATACATCCTTGGTTAGTCAAAACAGCTGTATGTGCTGAAAAGTTTTTCTCTATAGAGCAATTGATGGAGCTAGAGAAATGGAAGTATGATTTGAAAAAAGGGTCAAAAGTGAAATTCGTTTTGAGCCTGGTCTATCGCGTTGTAAGGAATGAGAAGATTCTAATGTTTTGCCATAACATTGCACCAGTGAGATTATTTGCAGAATTATTTGAGAAGTTCTTTGGATGGTATCGAGGTCGAGAAGTCTTAGTTCTTACTGGGGAGCTAGAGCTCTTTGAACGTGGAAGGATAATGGATAAGTTTGAGGATCCTAACGGACCATCAAAGATACTTCTTGCTTCAATTTCATCTTGTGCTGAAGGCATTAGTTTGACAGCAGCATCTCGGGTGATTTTGTTGGATTCAGAATGGAATCCATCCAAGACAAAACAGGCTATTGCACGTGCTTTTCGTCCTGGTCAGCAAAAGATGGTTTATGTGTACCAGCTTCTGGCAACAGGCACATTGGAGGAAGATAAGTATGGAAGAACGACCTGGAAAGAGTGGGTTTCAAGCATGATTTTTAGTGAAGAATATGTGCAGGACCCTTCCCGATGGCGAGCAGAAAAGATTGAAGATGACATACTGCGAGAAATGGTCGCAGAAGACCGCTCCAATTCATTCCATATGATTATGAAGAATGAAAAGACATCCACAAACTGA 3894 0.388 MPRKRRIHQLKHPFDSHPFEAILQGSWQALRYLAIERGTMVLHFKDNNYVVREKAPISDIRIKSRKATVSDCSSFLRPGIDICVLSSFQSTNGSDRKSPNPVWADAKISSIQRKPHEPECLCQYYVNFYVNQGCISSEVRTLNKEVKVVGINQISILQRLGHSPCEDHHYRWDSSEDWHAVPQTKLLTGKFLSDISWLIVSSVLKKVPFCVRSADNKIVYQIMGSDDISSLLDVVNFRIDNNMLVPIVSQVISSDTIKVDDTDDSLKDKAIPSYNPEGLRRSKRRNVQPERYLGCDETHVLDVGFIRTRPYKMDTRKDDVEDDELSMPLSSLIGLQKCSGVKGNDNGLKSDEMKCYNKLKVYKRRPKSKGVNSGDANENETQSQLAIVPVPLECDPINIEHFDSNAKVSKHYTQRNVEFPSKYYHMMGSPEPKRNDMDLLTFESYNYPSKIPDLEEIDDIASRRHYNHSIPKLKGKNSCDFDDLHFEGKWEGINSNKAVQGRKYHSTISRVRQSDEERTYKARSLSAGAYKELIDSYLKNMNAKPTKAEPPIAEQWIQFKETSNFGQKRETKASSVEDEEETDELDILWREMDVSLASSYVEEGTEGSGAPGFTEAWEKTDSLCRHDYRMNEEIGIYCVLCGTVSTEIKDVLPPFLERSWHYEEKPHSEGSEPEPEPEPKADENDDFHLLLNDALPDQPITGENDNVWALIPELRWKLHIHQKKAFEFLWKNIAGSMDPTLMEAASKKRGGCVISHAPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWKIPIPVYLIHGRRTYRAFKQNKVVFHGGPKPTDDVKHILDCLEKIQMWHAHPSVLVMGYTSFLTLMREDSKFSHRKYMAKVLRESPGILILDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFAYQVLKKLDPKYKRKLKGAGKARHLIEARARKFFLDNIAKKVDSKDEKEQMQGLNMLRKMTSGFIDVYENGNSEDLPGLQIYTLLMNTTDIQHEILKKLQKKMSACNGYPLELELLITLGSIHPWLVKTAVCAEKFFSIEQLMELEKWKYDLKKGSKVKFVLSLVYRVVRNEKILMFCHNIAPVRLFAELFEKFFGWYRGREVLVLTGELELFERGRIMDKFEDPNGPSKILLASISSCAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLATGTLEEDKYGRTTWKEWVSSMIFSEEYVQDPSRWRAEKIEDDILREMVAEDRSNSFHMIMKNEKTSTN 1297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01218 1297 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1103 1264 IPR001650 -
Accr7g01218 1297 CDD SF2_C_SNF 1092 1228 - -
Accr7g01218 1297 SMART helicmild6 1128 1217 IPR001650 -
Accr7g01218 1297 Gene3D - 1073 1291 IPR027417 -
Accr7g01218 1297 CDD DEXHc_ATRX-like 718 943 - -
Accr7g01218 1297 MobiDBLite consensus disorder prediction 663 684 - -
Accr7g01218 1297 Pfam SNF2-related domain 724 1013 IPR000330 GO:0005524|GO:0140658
Accr7g01218 1297 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 743 942 IPR014001 -
Accr7g01218 1297 Pfam Helicase conserved C-terminal domain 1100 1216 IPR001650 -
Accr7g01218 1297 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 51 1296 IPR044567 GO:0080188
Accr7g01218 1297 SMART ultradead3 714 958 IPR014001 -
Accr7g01218 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1018 1275 IPR027417 -
Accr7g01218 1297 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 944 IPR027417 -
Accr7g01218 1297 Gene3D - 698 983 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01218 Accr-Chr7 25949019 25954898 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01218 1143 1235 RAD5 or RAD16-like Gene Family AT5G05130 38.947 1.10e-11 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr7g01218 SNF2_N 5.5e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01218 K10875 - gmx:100811703 1719.13