Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01156 ATGACATCCTTTTATGTCTCGATTTCTGAAGACTTGATGGAAGATATGTTTGATATCAATTTTATTGTCATTCAACGTTGGGTTTCACCTAACACGGGATGCCTTCAAATAACACATTCTGAAGTGTTTCCATCTCCATTCATCATGCCTTGTGAAGAATTAATTCGAGATGTTCCAATTTTTCTACACAGAAATGTAGGCAACTATCTTTCAGAAAATGGGGTTGGATCATTAGCATCTCAAATCATATCTTACTACCAAGAAGTAATCAATTGTTTCACCATTGGAAGTACTCATCACCGCTTAATACCTCTAATTGTGCATCTTATTGTTGATACATCTTATCATGGCTCAATACCTTTGTCTTTTCATCTTCAAACCACTGCTGTGGATAGAGACAATGAATACAGTGAGCATATGATGGATATTATTAGTGATGATGATGAGTCAATAGAAATCTATATCGACATGGGCTTACCCGATCAACTATCTTCTACTAACGAAGATATTGAGTCAACGGAAATCAATCAAATAATAGAGCAGCAATCCATGCAGCACTTCTTCATGGTTCCGGCTACAGAGAAAGCTTTGGCATCACTCAAGAAGATGGAAAAGTTCACCGGTAATATAAAGACAAGCACATGTAGCATTTGCTTAGAAGCTTTCGACAATCAGGATGGCGAGGATGTTTTAGCACTGCCGTGTGACCATTTTTTCCATAATAATTGCATTGTAGGATGGCTAAAAACAAGCCATACATGTCCATTGTGTCGTTTTCAACTGCCTATGTAA 792 0.3725 MTSFYVSISEDLMEDMFDINFIVIQRWVSPNTGCLQITHSEVFPSPFIMPCEELIRDVPIFLHRNVGNYLSENGVGSLASQIISYYQEVINCFTIGSTHHRLIPLIVHLIVDTSYHGSIPLSFHLQTTAVDRDNEYSEHMMDIISDDDESIEIYIDMGLPDQLSSTNEDIESTEINQIIEQQSMQHFFMVPATEKALASLKKMEKFTGNIKTSTCSICLEAFDNQDGEDVLALPCDHFFHNNCIVGWLKTSHTCPLCRFQLPM 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01156 263 CDD RING-H2_PA-TM-RING 214 258 - -
Accr7g01156 263 SMART ring_2 215 257 IPR001841 -
Accr7g01156 263 Pfam Ring finger domain 214 258 IPR001841 -
Accr7g01156 263 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 163 262 - -
Accr7g01156 263 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 263 IPR013083 -
Accr7g01156 263 SUPERFAMILY RING/U-box 214 261 - -
Accr7g01156 263 SMART ringv_2 214 258 IPR011016 GO:0008270
Accr7g01156 263 ProSiteProfiles Zinc finger RING-type profile. 215 258 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01156 Accr-Chr7 23389215 23390006 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01156 189 262 C3H Transcription Factor Family AT1G18760 41.892 4.30e-15 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01156 - - pcin:129298469 217.238