Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01080 ATGTCTCTTATGGACATCGTTAAAAGATTCAACTTCAAGCACTTCTGCAAAAAATGCAAGAAAGGGTTTGGGAGTGGCAGGGCTCTTGGAGATCACATGAAGGCGCATGGCATCCGCGACAAAAGCAGCGCGATGGATGATGATGATGACGACGACGACGACGATGCGGCGAGTGACGGGGAAGACAGGAAGCTCGAGGGAGATGCCAATAAACAGATGTATAGCATCTCTAAGAAGAAACGGTCTTCCAGAGTCGAAGTGGGAATTAGCTTCAATAATAACAACCCTAATTGCTCATCACCCAATGAGGATGAATACCTTGCTAACTGTTTAATGTTGCTGTCCAACAAAGCCCATAAGTCTTCTACGGTGGCGAGCAAAGAGGGAGAGAGAGTAAAACCTAATTTCTGCTTGATGACTCCAATGTCATCCGATCATACTAACAAAGGTAAAGAGGTAGACAATTATAACAACAATAAGAGTTGGTTTGAATGCAAAGCATGCAAGAAAGTGTTTAATTCCCATCAAGCATTAGGTGGTCATAGGGCCAGCCACAAGAAAGTCAAAGGTTGCTTCGCGGCCCGGCCCCACAACCTCGACGAGGTCAGTACTGTCATAGCCGATGATGACGCCATCACCCAAGAAGATCCACTCTTCCCAACCAATCATAACTCCAACAACAGCAATTCGACCCTCCACTTAGATCATGGCTCCAACAATAACAATGCCCCGTCCTCTAAAAGGAAATCCAAAGTTCATGAATGTTCGATATGTCGCCGAGTTTTCTTGTCCGGGCAAGCTCTCGGAGGACACAAAAGGTGTCATTGGATTACATCAACCGCACCGGATACCTTAACATTGGTTAGGTTTCAACAATTTCAAGAACAAATAGAACAACACATGAAGTATAATAATCCAGTTATACCTGATGATAATAAGTTTGCAGACTTCCATGAGGACCCGATTCATCTGAAGCTCGATCTCAACCTCCCGGTTCTGGCTCTGTCTACAGCACGCAATGTCTCCGCAGAAATGTACTTACAGGGTAGTGGTGGTAGAGTACCAAAGCAACATGAGGATGAAGATGACAAAGTTCAAAGCTATCAAAATCACGAACTGGATAAAGAGAATAATAATGATGAAGAAGGAAAGAACAGTAACAGAAACGTCAACATTAGCAAAGATTCGACAATGCAAAAAGAGGTGGAAGATGAAGAAACTAATGACAGTAAGGTGAAGTTAGCAAAACTAAGTGAAGATGATGTAGGAGGAAGTTCTTTGCCATGGTTACAGGTAGGAATCGGTTCCACTACTACTAGTGACATCGGAAATGGCCCATAA 1341 0.4362 MSLMDIVKRFNFKHFCKKCKKGFGSGRALGDHMKAHGIRDKSSAMDDDDDDDDDDAASDGEDRKLEGDANKQMYSISKKKRSSRVEVGISFNNNNPNCSSPNEDEYLANCLMLLSNKAHKSSTVASKEGERVKPNFCLMTPMSSDHTNKGKEVDNYNNNKSWFECKACKKVFNSHQALGGHRASHKKVKGCFAARPHNLDEVSTVIADDDAITQEDPLFPTNHNSNNSNSTLHLDHGSNNNNAPSSKRKSKVHECSICRRVFLSGQALGGHKRCHWITSTAPDTLTLVRFQQFQEQIEQHMKYNNPVIPDDNKFADFHEDPIHLKLDLNLPVLALSTARNVSAEMYLQGSGGRVPKQHEDEDDKVQSYQNHELDKENNNDEEGKNSNRNVNISKDSTMQKEVEDEETNDSKVKLAKLSEDDVGGSSLPWLQVGIGSTTTSDIGNGP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01080 446 MobiDBLite consensus disorder prediction 215 249 - -
Accr7g01080 446 PANTHER OS02G0659100 PROTEIN 11 74 - -
Accr7g01080 446 MobiDBLite consensus disorder prediction 45 59 - -
Accr7g01080 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 275 IPR013087 -
Accr7g01080 446 SUPERFAMILY beta-beta-alpha zinc fingers 250 276 IPR036236 -
Accr7g01080 446 ProSitePatterns Zinc finger C2H2 type domain signature. 255 275 IPR013087 -
Accr7g01080 446 MobiDBLite consensus disorder prediction 37 79 - -
Accr7g01080 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 14 36 IPR013087 -
Accr7g01080 446 MobiDBLite consensus disorder prediction 397 418 - -
Accr7g01080 446 MobiDBLite consensus disorder prediction 217 246 - -
Accr7g01080 446 ProSitePatterns Zinc finger C2H2 type domain signature. 165 185 IPR013087 -
Accr7g01080 446 Pfam C2H2-type zinc finger 163 187 - -
Accr7g01080 446 Pfam C2H2-type zinc finger 14 36 - -
Accr7g01080 446 Pfam C2H2-type zinc finger 252 277 - -
Accr7g01080 446 MobiDBLite consensus disorder prediction 354 383 - -
Accr7g01080 446 ProSitePatterns Zinc finger C2H2 type domain signature. 16 36 IPR013087 -
Accr7g01080 446 ProSiteProfiles Zinc finger C2H2 type domain profile. 163 190 IPR013087 -
Accr7g01080 446 MobiDBLite consensus disorder prediction 349 446 - -
Accr7g01080 446 SMART c2h2final6 163 185 IPR013087 -
Accr7g01080 446 SMART c2h2final6 253 275 IPR013087 -
Accr7g01080 446 SMART c2h2final6 14 36 IPR013087 -
Accr7g01080 446 MobiDBLite consensus disorder prediction 430 446 - -
Accr7g01080 446 SUPERFAMILY beta-beta-alpha zinc fingers 14 185 IPR036236 -
Accr7g01080 446 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01080 Accr-Chr7 19833804 19835144 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01080 100 328 C2H2 Transcription Factor Family AT1G02040 35.371 3.31e-32 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Accr7g01080 zf-C2H2_6 9.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01080 - - gmx:100793846 300.441