Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01037 ATGAGCTTCTTGCAGGGAATTATCGACTCGCTCAGCTCCATCTTGTATTCCTCCAATTCTTCTCATGATTCCAACATTCCCAACTCTTCGATTATGGAAGGCGTGTCTACAACCTCAACTTCCAATGAACGAGTCGCTTACAAGCTAAAAGGGTACTTCGATTTGGCCAAGGAAGAGATTTCCAAGGCCGTTAGGGCCGAAGAATGGGGCTTGATCGATCAGGCTATTCTTCATTATAACAACGCACAGCGGATTTTGATCGAAGCCAGTTCTACTGCTGTGCCTTCCTTTATTACTTCCAGTGAACAAGAGAAGGTGAAATCTTATCGTGAAAAAATATCGAAATGGCAGGGTCAAGTTTCTGAAAGGTTACAGATTCTAAGTAGACGGTCAGGCGGCAAGTCCACTTTTCAGAAAACCGCAACTCAGGGACAAACTGCTGCTGTTCCATTGAAGGCGGCAAATGCTAGAAAAAGTGTGTTGCAAACTCAGGGACAAACTGCTGCTGTTCCATTTCCGGCGTCAAATGCTAGAAAAAGTGTGTTGCAAAAGAATCATCAAAGAACAAACCAAATGGATAGAGATGCAAGCCCAAAATCTAGTCAGAAATCAGGTGGAAATTATGATGAAAAATTAGTTGAAACAATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGATATTGCGGGTCTTGAGAAGGCAAAACAGGCGTTAATGGAAATGGTTATTTTGCCGACTAAGCGAAGAGATCTCTTCACTGGTCTTCGAAGGCCGGCTAAAGGTTTGCTTCTCTTTGGTCCCCCGGGTAATGGAAAAACCATGCTTGCCAAAGCAGTAGCTTCAGAATCAGCAGGAACATTTTTCAACGTATCTGCAGCTTCCTTGACATCAAAATGGGTTGGTGAAGCTGAAAAGCTTGTCCGGACTCTTTTCATGGTAGCTATATCCAGGCAGCCATCTGTGATTTTCATTGATGAGATTGACAGTATTATGTCAACAAGGTTGGCTAATGAGAATGATGCAAGCAGACGGTTAAAATCTGAATTTCTTATCCAGTTCGATGGGGTGACGTCCAATCCTGATGACATTGTAATTGTTATTGGAGCAACCAATAAGCCACAAGAACTGGATGATGCAGTTCTTCGGAGACTTGTGAAGAGAATTTACGTACCTTTGCCAGATGCTAATGTTAGGAGACTTCTACTAAAGCACAAACTCAAGGGTCAAGCGTTCTCATTACCTAGTGGAGATCTAGAAAAGCTTGTAAAAGATACAGAAGGATATTCCGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCGGCAATGATGCCAATAAGAGAGTTGGGTTCTGACATCCTAACTGTTAAGCCAAATCAGGTAAGAGGACTGAGATATGAGGATTTTAATAAGGCAATGAGTGTAATTAGACCAAGTTTAAACAAAAGCAAGTGGGAAGAGCTTGAGCGGTGGAATGAGGAATTTGGCTCTAACTGA 1506 0.4236 MSFLQGIIDSLSSILYSSNSSHDSNIPNSSIMEGVSTTSTSNERVAYKLKGYFDLAKEEISKAVRAEEWGLIDQAILHYNNAQRILIEASSTAVPSFITSSEQEKVKSYREKISKWQGQVSERLQILSRRSGGKSTFQKTATQGQTAAVPLKAANARKSVLQTQGQTAAVPFPASNARKSVLQKNHQRTNQMDRDASPKSSQKSGGNYDEKLVETINTAIVDRSPSVRWEDIAGLEKAKQALMEMVILPTKRRDLFTGLRRPAKGLLLFGPPGNGKTMLAKAVASESAGTFFNVSAASLTSKWVGEAEKLVRTLFMVAISRQPSVIFIDEIDSIMSTRLANENDASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQELDDAVLRRLVKRIYVPLPDANVRRLLLKHKLKGQAFSLPSGDLEKLVKDTEGYSGSDLQALCEEAAMMPIRELGSDILTVKPNQVRGLRYEDFNKAMSVIRPSLNKSKWEELERWNEEFGSN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01037 501 SMART AAA_5 262 398 IPR003593 GO:0016887
Accr7g01037 501 CDD MIT_spastin 49 127 - -
Accr7g01037 501 MobiDBLite consensus disorder prediction 194 208 - -
Accr7g01037 501 Gene3D - 397 479 - -
Accr7g01037 501 Pfam ATPase family associated with various cellular activities (AAA) 266 396 IPR003959 GO:0005524|GO:0016887
Accr7g01037 501 ProSitePatterns AAA-protein family signature. 368 387 IPR003960 GO:0005524|GO:0016887
Accr7g01037 501 Gene3D - 225 495 IPR027417 -
Accr7g01037 501 MobiDBLite consensus disorder prediction 170 187 - -
Accr7g01037 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 225 498 IPR027417 -
Accr7g01037 501 FunFam Spastin, putative 225 409 - -
Accr7g01037 501 FunFam AAA-type ATPase family protein 397 479 - -
Accr7g01037 501 CDD RecA-like_spastin 231 394 - -
Accr7g01037 501 Gene3D - 41 130 - -
Accr7g01037 501 SMART smart 49 126 IPR007330 -
Accr7g01037 501 FunFam AAA-type ATPase family protein 42 131 - -
Accr7g01037 501 Pfam AAA+ lid domain 421 452 IPR041569 -
Accr7g01037 501 PANTHER AAA DOMAIN-CONTAINING 104 500 - -
Accr7g01037 501 MobiDBLite consensus disorder prediction 170 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01037 Accr-Chr7 18927772 18934352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01037 225 451 Calmodulin-binding Proteins AT3G56690 42.373 9.42e-47 172