Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01024 ATGACATCCTCTTACATTTCGATTTCTGAAGACTTGATGGAAGATCGATTTGATATTAGTTTTACTGTCATTCAACACGGGATTTCACCTACCACAGGGCTTCTTCAGATGACACATTTTGAAGTGTTTCAGTCCCCAATCACCATGCCCTGTGAAGAATTAATTCGAGATGTTCCAACATTTTTATACAGAAATGTACGTGGTTATCTTTCTGAAAACGATGTCGGGTTATTAGCATCAGAAATCATATATTATCACCAAGAAGTAATCCGACGTACCACCATCAGAACTACTGAGCATCGCTTAATACCTCTAATTGTGGATCTTCATGTTGCTACTTTTGATCATGGCTTAGTACATTCATTTTTTAATCTTCAAACAACCGCTATATATGGAGACAATGAATATATATACATGATAGATGTCGGTGATGATGATCAAGAGCCAATTGAATTCTCTCATGTCGTTGACTCGTCCATTCAACAATCTTTTGATTATGACAATCGGCATATTATTAATACTACTGATGATCCTGAGTCCGTAGAAATCAATCAACTCATAGAGGAATCCATGCAACACTTGTTTATAGTTCCGACAACACAGGAGGCCATATCACTATTGAAGAAGATGAAAATTTCTGATGATAAAGTAAAGGAAGGCCAATGTAGCATTTGCTTAGAAGATTTCGATGACCGCGGTGATGGTGATGATGTTTTAGGATTACCCTGTGATCATTTTTTTCACCATAATTGTATTGTGCAATGGCTAAACATGGGTCATACATGCCCATTGTGCCGCTTTGAATTGCCTATAGAATAG 819 0.3712 MTSSYISISEDLMEDRFDISFTVIQHGISPTTGLLQMTHFEVFQSPITMPCEELIRDVPTFLYRNVRGYLSENDVGLLASEIIYYHQEVIRRTTIRTTEHRLIPLIVDLHVATFDHGLVHSFFNLQTTAIYGDNEYIYMIDVGDDDQEPIEFSHVVDSSIQQSFDYDNRHIINTTDDPESVEINQLIEESMQHLFIVPTTQEAISLLKKMKISDDKVKEGQCSICLEDFDDRGDGDDVLGLPCDHFFHHNCIVQWLNMGHTCPLCRFELPIE 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01024 272 SMART ring_2 222 265 IPR001841 -
Accr7g01024 272 ProSiteProfiles Zinc finger RING-type profile. 222 266 IPR001841 -
Accr7g01024 272 SUPERFAMILY RING/U-box 212 270 - -
Accr7g01024 272 SMART ringv_2 221 266 IPR011016 GO:0008270
Accr7g01024 272 Pfam Ring finger domain 221 266 IPR001841 -
Accr7g01024 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 271 IPR013083 -
Accr7g01024 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 177 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01024 Accr-Chr7 18541994 18542812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01024 198 269 C3H Transcription Factor Family AT1G68180 45.205 1.30e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01024 - K11982 pcin:129298469 214.927