Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g01021 ATGCCCTGTGAAAAATTAATTCGAGATATCCCAATATTTCTACGTAGAAATGTAGCCGACTATCTTTCTGAAAATGATGTTAGGTCATTAGCATCAGAAATCATATCTTACCACCAAGAAGTAATCCAACGTACCACCATCAGAACTATCGAGCATCGCTTAATACCTCTAATTGTGGATCTTCATGTTGATACTTCTGATGATCATGGCTTAGTACCTTTGTTTTTTGATCTTCACACTATCGCTCTATCTAGAGACAATGAATACATTATGGATGTCGGTGATGATGATCAAGAGTATCATGCCGTTGACTCGTCCATTCAACAATCTTTTGATTATGACAATCGGCATATGATTAATACTACTGATGATCTTGAGTCTGCAGAAATCAATCAACTCCTAGAGGAATCCATCCAACACTTGTTTATAGTTCCGACAACACAGGAGGCCATAGCACTATTGAAGACGATGAAAATTTCCGATGATAAAGTAAAGGAAGGCCAATGTAGTATTTGCTTGGAAGATTTTGATGACCGCGGTGATGGTGTTTTAGCATTACCCTGTGACCATTTTTTCCACAATAATTGTATTATGAAATGGCTAAACACGGGTCATACATGTCCATTGTGTCGGTTTAAATTGCCTATAGAATAG 654 0.3746 MPCEKLIRDIPIFLRRNVADYLSENDVRSLASEIISYHQEVIQRTTIRTIEHRLIPLIVDLHVDTSDDHGLVPLFFDLHTIALSRDNEYIMDVGDDDQEYHAVDSSIQQSFDYDNRHMINTTDDLESAEINQLLEESIQHLFIVPTTQEAIALLKTMKISDDKVKEGQCSICLEDFDDRGDGVLALPCDHFFHNNCIMKWLNTGHTCPLCRFKLPIE 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g01021 217 ProSiteProfiles Zinc finger RING-type profile. 169 211 IPR001841 -
Accr7g01021 217 CDD RING-H2_PA-TM-RING 168 211 - -
Accr7g01021 217 SUPERFAMILY RING/U-box 160 215 - -
Accr7g01021 217 SMART ring_2 169 210 IPR001841 -
Accr7g01021 217 SMART ringv_2 168 211 IPR011016 GO:0008270
Accr7g01021 217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 216 IPR013083 -
Accr7g01021 217 Pfam Ring finger domain 168 211 IPR001841 -
Accr7g01021 217 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 113 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g01021 Accr-Chr7 18486330 18486983 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g01021 123 217 C3H Transcription Factor Family AT1G18760 37.895 2.08e-15 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g01021 - - pcin:129298469 231.491