Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00993 ATGGATGGTATTCATGGGGATGATTCTGGGATACATATGAGTGATGCACAACATCCAATGCATGTGCCATATGTACCCGAAAATGAACAACATGGATTGGACCATATGAGTGATGGGAATAGGATGGAAGACAATAACAATTGTGGTGATATTAATGTCAGCGGACATGAGAGCATAGAAGAAGTTGCCAACCCTGGAAATGTTACTGATGATCATGGTGCAATAATTGAACAAGTTAGTGGTGACCAGCTCACGTTGTCTTTTCAAGGCCAGGTTTATGTATTTGACTCTGTGTCGCCAGAAAAGGTTCAAGCTGTGCTTTTACTATTGGGAGGTCGTGAAGTACCTTCCATGTCTGCAAGTACAATGAATGTTCACCATAATAATCGGGATATGTCTGGGACTCCAGCAAAACTCAGTGTCCCTCAAAGACTAGCCTCGTTGATTAGATTTCGAGAAAAGCGGAAAGAACGGAATTTTGAAAAGAAAATACGTTATACTGTTCGTAAAGAAGTAGCATTAAGGATGCAGAGAAATAAAGGTCAATTTACATCTTCCAAGTCAAACCCTGATGAATCTGTGCCAGCTGCAACAAATCTGGGGACAAATGAAAACTGGACATCAGACAATATTGGATCCCAACAGCTGGATGTTGTCTGTAGGCACTGTGGCATCAGCGAGAAATGCACACCAATGATGCGACGTGGACCTGAAGGGCCAAGAACCCTCTGCAATGCATGCGGACTTATGTGGGCAAATAAGGGAACTCTAAGGGACCTGACAAAAACTCCCTTACCTGGACACAATTCTTCATTGAATAGGAATGAGAGTAAAAGTTTAGGCCAGGCAGGTAGTTCTTAG 861 0.4262 MDGIHGDDSGIHMSDAQHPMHVPYVPENEQHGLDHMSDGNRMEDNNNCGDINVSGHESIEEVANPGNVTDDHGAIIEQVSGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSMSASTMNVHHNNRDMSGTPAKLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSSKSNPDESVPAATNLGTNENWTSDNIGSQQLDVVCRHCGISEKCTPMMRRGPEGPRTLCNACGLMWANKGTLRDLTKTPLPGHNSSLNRNESKSLGQAGSS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00993 286 ProSiteProfiles GATA-type zinc finger domain profile. 214 262 IPR000679 GO:0006355|GO:0043565
Accr7g00993 286 CDD ZnF_GATA 219 262 IPR000679 GO:0006355|GO:0043565
Accr7g00993 286 ProSitePatterns GATA-type zinc finger domain. 220 247 IPR000679 GO:0006355|GO:0043565
Accr7g00993 286 MobiDBLite consensus disorder prediction 263 286 - -
Accr7g00993 286 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 216 266 - -
Accr7g00993 286 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Accr7g00993 286 Pfam CCT motif 144 186 IPR010402 GO:0005515
Accr7g00993 286 SMART GATA_3 214 267 IPR000679 GO:0006355|GO:0043565
Accr7g00993 286 SMART tify_2 77 112 IPR010399 -
Accr7g00993 286 MobiDBLite consensus disorder prediction 181 206 - -
Accr7g00993 286 Pfam tify domain 82 111 IPR010399 -
Accr7g00993 286 Gene3D - 212 276 IPR013088 GO:0006355|GO:0008270
Accr7g00993 286 MobiDBLite consensus disorder prediction 261 286 - -
Accr7g00993 286 ProSiteProfiles Tify domain profile. 77 112 IPR010399 -
Accr7g00993 286 Pfam GATA zinc finger 220 256 IPR000679 GO:0006355|GO:0043565
Accr7g00993 286 PANTHER GATA TRANSCRIPTION FACTOR 28 26 269 IPR045280 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00993 Accr-Chr7 18050160 18053338 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00993 1 280 Tify Gene Family AT1G51600 58.131 1.88e-112 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Accr7g00993 CCT 1.3e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00993 - - pvu:PHAVU_008G254600g 396.741