Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00889 ATGGATGCCAATTGGAGACCCACACGAGGTATTGAATCCACTATGGATACAAATACAAGTGATTGGAGAACTCAACTGCAACCTGATTCACGTGAAAGAATTATCAACAAAATAATGGATGCACTACAGAGACATATTCCTGTTTCTGGTCAAGATGGTTTGCATGAATTGTGCAAAATTGCTCAAAGGTTTGAAGATAAGATTTATACTGCTGCAACAAGCCAGTCTGATTATCTTCGGAAAATATCTTTGAAGATACTTGCAATGGATAATAAAACCCAGAATACCATGGTCAACCCTTCACAATCAAATGCAGGTGGCCCTAGCAACAAGCGTATTGATTCAGGAATTCCTATGCATTGTCAAGTTCACAATCCAGGGCAGCTACATGCTACTCCAGTGCGTAATCAGAATCAGCAAGCTAATAATGTTCAACAGCCAACGCAACCTATGCTGCAGCAAGAGTCCCAATCTGTTATCAGGCAACAACAACAACAACAAAATACATCAATTAATAACCAGCAACAAATCCCAATTTCTCAACAGCCAATATTGGCTCCACAGCAGCAGCAGCACCTTCTAGCGCTACAGTCAAATGTAACAAGCGTCCGACACCCTCAGCTAGTTGGGCAACAGAATGAGGGTGATTTGCAGCAACATCTGAGATTGCTTGTTGGGCAGCAGAATAATCTTCCAATCCTGCAGCAGCCCCAGCAACAGCAGCAGCAGTTGATAAATCAGCAGAACAATCTCGCCAACATGCATGAGCAACAGTTGGGAAGTAACATCCCAGGGTTACAACTACAACAGAAGCTTGCAACTCAGCCTGGCAACTCAAGCTTGCAGACTAACCCCTTCCAACCAGATATGCAGCAAAGACTTCAGGCTTCGAGTTCTTTTCTTCAACAGCAAAATGTACTACTTGATCAACAAAAGCAATTATATCAGTCACAACGAGCTCTTCCAAACTCATCATCAAATTCAACAACACAGACCAGAAGACCTGAAGAGGATGATTGGAAAGAAGAGTTGTACCAAAAGATCAAGTCCATGAAAGAATCATACTTGCCAGAATTGTCTGAAATGCACCAGAAAATTGAAGCTAAACTTCAGCAGCATGAAGCCCTTCCAGATGGACCCAGGTCAGATCAACTTGAAAAGCTGAAGATATTCAAAACAATGTTGGAGCGCCTCATGACATTTCTACAGATTTCCAAGGGCCATATTGTGCCTGCTTTCAAGGAAAAAATGGCTTCATATGAGAAGCAGATCTTAAACTTTATAGAAACAAATAGGCCCAGGAAAGCTATGTCTTCTATGCAGCGAGGGCAACTTCCTCCACCTCATATGCACCCAGTACCACAGTCACAATCCCAACTTACTCAAGTTCAATCTCATGAAAATCAAATGAACTCTCAGATGCAATCAACAAACTTTGAGAGTTTTGTGAATTTCCTGCAGCAGGTTGGGGCGAGCTCCCTTCAACAAAACTCTCTGAATGCTCCTCAACAGCAAAATGTACTTGATCAACAACAGCAATCATATCAGTCGCAAAGAACTCTTCCTGTTTCATCATCATCTTCTCTAGGTTCAACTGCATTGACTGGAAAATCTGGTGGGGACGATTGGCAAGAAGCGGCTTACCAAAAGAAAAAGAATTTGAGGAAGTCTCCTGAACCCCCCGAAGAGCCAGTTTTCAACTGCCCAATATGTATGGAACCTTTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAGATGCATTAAGGCTGCAATAAATGCACAGGGTAAATGCCCTACCTGTAGGAAAAAGGTTAATGTGAAAGAGCTCATAAGGGTTTTTCTCCCATCAGCTAGTTGA 1872 0.422 MDANWRPTRGIESTMDTNTSDWRTQLQPDSRERIINKIMDALQRHIPVSGQDGLHELCKIAQRFEDKIYTAATSQSDYLRKISLKILAMDNKTQNTMVNPSQSNAGGPSNKRIDSGIPMHCQVHNPGQLHATPVRNQNQQANNVQQPTQPMLQQESQSVIRQQQQQQNTSINNQQQIPISQQPILAPQQQQHLLALQSNVTSVRHPQLVGQQNEGDLQQHLRLLVGQQNNLPILQQPQQQQQQLINQQNNLANMHEQQLGSNIPGLQLQQKLATQPGNSSLQTNPFQPDMQQRLQASSSFLQQQNVLLDQQKQLYQSQRALPNSSSNSTTQTRRPEEDDWKEELYQKIKSMKESYLPELSEMHQKIEAKLQQHEALPDGPRSDQLEKLKIFKTMLERLMTFLQISKGHIVPAFKEKMASYEKQILNFIETNRPRKAMSSMQRGQLPPPHMHPVPQSQSQLTQVQSHENQMNSQMQSTNFESFVNFLQQVGASSLQQNSLNAPQQQNVLDQQQQSYQSQRTLPVSSSSSLGSTALTGKSGGDDWQEAAYQKKKNLRKSPEPPEEPVFNCPICMEPLVEEMSTRCGHIFCKRCIKAAINAQGKCPTCRKKVNVKELIRVFLPSAS 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00889 623 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED 440 552 IPR044661 GO:0003713|GO:0031490
Accr7g00889 623 Pfam Zinc finger, C3HC4 type (RING finger) 567 605 - -
Accr7g00889 623 Gene3D Coactivator CBP, KIX domain 21 99 IPR036529 GO:0003712|GO:0006355
Accr7g00889 623 SMART ring_2 568 605 IPR001841 -
Accr7g00889 623 MobiDBLite consensus disorder prediction 496 542 - -
Accr7g00889 623 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 531 622 IPR013083 -
Accr7g00889 623 MobiDBLite consensus disorder prediction 140 173 - -
Accr7g00889 623 MobiDBLite consensus disorder prediction 1 21 - -
Accr7g00889 623 ProSitePatterns Zinc finger RING-type signature. 583 592 IPR017907 -
Accr7g00889 623 MobiDBLite consensus disorder prediction 317 331 - -
Accr7g00889 623 MobiDBLite consensus disorder prediction 434 473 - -
Accr7g00889 623 MobiDBLite consensus disorder prediction 496 538 - -
Accr7g00889 623 SUPERFAMILY Kix domain of CBP (creb binding protein) 19 95 IPR036529 GO:0003712|GO:0006355
Accr7g00889 623 ProSiteProfiles Zinc finger RING-type profile. 568 606 IPR001841 -
Accr7g00889 623 FunFam Mediator of RNA polymerase II transcription subunit 15a 21 99 - -
Accr7g00889 623 Coils Coil 356 376 - -
Accr7g00889 623 MobiDBLite consensus disorder prediction 317 340 - -
Accr7g00889 623 MobiDBLite consensus disorder prediction 454 473 - -
Accr7g00889 623 Pfam KIX domain 20 98 IPR036546 -
Accr7g00889 623 SUPERFAMILY RING/U-box 567 612 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00889 Accr-Chr7 14409191 14423573 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00889 556 621 C3H Transcription Factor Family AT3G07200 65.672 2.91e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00889 K14972 - msyl:126615400 380.563