Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00612 ATGAGTCGCTACGACAGTCGCTCTGGGGACCCTACTTCTTACCGTGACCGGAGAAGTGATTCGGGGCTGGGTGCTCCCACAAGTTACGGTGGTTCTGTCCACTCTTCCTCAAGCAGGAGGGATTACAATGATGGTGGATCCCCAAGGAAATTGAATTTGGATGGCCTGCCTCATTTTGAGAAGAATTTCTATGTAGAATCACCAGAGGTAAGGGCTATGACTGAGGATGAGGTTAATGAGTATCGGCAGAAGAGGGAGATAACTGTTGAAGGTCGAGATGTGCCGAAACCAGTCAAAAGCTTTCACCTTGCTGGTTTCCCAGAGTATGTTTTGCAAGAAATTACAAAAGCTGGTTTTGTTGAACCCACACCTATTCAATCTCAAGGTTGGCCAATGGCTTTGAAAGGGCGTGATCTCATTGGAATAGCTGAAACTGGATCAGGGAAGACACTTTCTTATCTATTGCCTGCAATCGTACATATTAATGCCCAGCCTATTCTAGAACCTGGAGATGGACCAATTGTGCTAGTGTTGGCTCCAACTCGTGAACTTGCTGTCCAAATACAGCAAGAAGCTACTAAGTTTGGTTCATCATCTAGGATTAAGACTACGTGCATATATGGTGGGGTACCCAAGGGACCTCAGGTGCGGGATCTCCAGAAAGGTGTTGAAATTGTAATTGCTACTCCGGGAAGGTTGATTGACATGCTTGAGTCAAATCATACAAACTTACGACGAGTTACATACCTTGTATTGGATGAGGCTGATAGGATGCTGGACATGGGCTTTGAGCCTCAGCTACGGAAGATTGTTGCTCAGATTCGACCTGACCGGCAAACGTTATGCTGGAGTGCTACCTGGCCAAAGGAGGTTGAGCAACTAGCAAGGCAGTCCCTTTACAACCCATACAAAGTGATTATAGGCTCTCCAGATTTAAAAGCTAACCATGCAATACGTCAACATGTTGACATTGTTTCTGAGAAGCAGAAATATGATAAATTAGTGAAGTTGCTGGAGGACATCATGGATGGCAGCCGAATACTGATATTCATGGATACTAAGAAAGGATGTGATCAGATCACTAGGCAGCTCCGCATGGATGGTTGGCCAGCACTTTCAATTCATGGAGATAAAAGTCAAGCAGAAAGAGATTGGGTGCTGTCAGAGTTCAGATCTGGAAAGAGTCCTATTATGACTGCAACAGATGTTGCAGCTCGTGGTTTAGACGTGAAGGATGTGATGTATGTAATAAATTACGACTTCCCAGGATCTCTTGAGGACTATGTTCATCGCATTGGTCGGACTGGGAGAGCTGGTGCAAAGGGGACCGCATATACATTCTTTACTGCTGCCAATGCTAGATTTGCAAAGGAACTTATAGGCATACTTGAGGAAGCTGGACAGAAAGTGAGTCCTGAATTGGCAGCAATGGCACGTGGGGCACCTCCTCCGCCTTCAGGTTATGGAGGTTTCCGTGGGAGAGGTTATGGCACTCGCCCACTGAGATGA 1509 0.4606 MSRYDSRSGDPTSYRDRRSDSGLGAPTSYGGSVHSSSSRRDYNDGGSPRKLNLDGLPHFEKNFYVESPEVRAMTEDEVNEYRQKREITVEGRDVPKPVKSFHLAGFPEYVLQEITKAGFVEPTPIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHINAQPILEPGDGPIVLVLAPTRELAVQIQQEATKFGSSSRIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESNHTNLRRVTYLVLDEADRMLDMGFEPQLRKIVAQIRPDRQTLCWSATWPKEVEQLARQSLYNPYKVIIGSPDLKANHAIRQHVDIVSEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVMYVINYDFPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELIGILEEAGQKVSPELAAMARGAPPPPSGYGGFRGRGYGTRPLR 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00612 502 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 99 127 IPR014014 GO:0003724
Accr7g00612 502 Pfam DEAD/DEAH box helicase 123 294 IPR011545 GO:0003676|GO:0005524
Accr7g00612 502 MobiDBLite consensus disorder prediction 1 17 - -
Accr7g00612 502 MobiDBLite consensus disorder prediction 1 54 - -
Accr7g00612 502 FunFam ATP-dependent RNA helicase RhlB 309 481 - -
Accr7g00612 502 MobiDBLite consensus disorder prediction 479 502 - -
Accr7g00612 502 CDD SF2_C_DEAD 318 448 - -
Accr7g00612 502 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 305 IPR014001 -
Accr7g00612 502 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 333 478 IPR001650 -
Accr7g00612 502 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 78 478 - -
Accr7g00612 502 SMART helicmild6 358 439 IPR001650 -
Accr7g00612 502 Gene3D - 309 480 IPR027417 -
Accr7g00612 502 SMART ultradead3 118 321 IPR014001 -
Accr7g00612 502 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 251 259 IPR000629 -
Accr7g00612 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 454 IPR027417 -
Accr7g00612 502 CDD DEADc_DDX5_DDX17 110 305 - -
Accr7g00612 502 FunFam probable ATP-dependent RNA helicase DDX17 61 308 - -
Accr7g00612 502 Gene3D - 62 308 IPR027417 -
Accr7g00612 502 MobiDBLite consensus disorder prediction 25 42 - -
Accr7g00612 502 Pfam Helicase conserved C-terminal domain 330 439 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00612 Accr-Chr7 9070332 9075863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00612 86 459 Eukaryotic Initiation Factors Gene Family AT3G19760 33.867 2.11e-73 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00612 K12823 - gmx:100790464 888.256