LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr7g00571	ATGGCTTCAACTTCTTCCTCTACTCCATCACTTCAACCTCGGAACAAATATGATGTTTTTATTAGCTTTATAGGTGAGGACACCTCAAACTGTCTGAACGATCAGCTTTCGGCGCACACCTCATCAATTTTCGGGTTACGACTGTTGGTTGTGCTGGGCATATGCGTAGGAGCAGCCATAGTTCTTGTTCTGTTTCTCATATCTCTCTGGTTCACCAAGCGCAACAACAATTCTTCCAACCACAACTCTTCACACAATCCTTCCATTCCAAATTTCTCCAAGGAGATCCAGCAAATCAAGCTTGACCCGTCTCGTGGTATGGCTTCATCCTCTTCCTCTGCTACATCTTCTCAATCTCCAAAGAAATATGATGTTTTTATTAGCTTTAGAGGTGAGGATACACGCCTCAATTTCACAAGCCACCTTCATGAAGCTCTTCGTAGTAAACAAATAGATACATACATCGACTACAGGCTTGAGAAAGGAGATGAGGTATGGCCATCTCTTGAGAAAGCCATTGAAGATTCAATTCTGTTCCTTGTGATATTCTCAGAAAGCTATGCATCTTCCACGTGGTGCTTGAAGGAGCTTGCAAAAATATTAGATTGCTCCAAAAATGAAGATCACCTTGTTATGCCAGTGTTCTATGGAGTAGATCCTTCACATATCAGGAAGCAATCTGGGAGTTACCAGAAAGCATTTGAACAACATGAGCACAAAGGCCTCGACAAACAACAACTGCAACATTGGAGAGAGGCTCTCACTCATGCTGCCAATTTATCTGGTTGGCATTGTGGCGTCGATCGGAATGAAGCGGAGCTAATTAAAGAAATAATTAAATATGTTGTACAAAAGCTAGACGATAAGTATCAGAGTGAGGATTATCTAAAGGATTTGATTGGAATTCATAGGAAAATGGCTGATGTAGAATCATTGTTGTACAAAGATTCAAATGATGATGTCAGATTTATTGGCATTTGGGGCATGGGTGGTGTGGGCAAAACAACTCTTGCAAAAGCATTGTTTGACAGATTTCATTCTGCATATGAAGGGTCTTGCTTTTTGTCTAGTGTAATGGAAAACTCAAAGAAATATGGAATAGGTGCTTTGAAACAAAAACTTATTTTGGAGTTATTAGGGGATAAGGAATCTCACATTGTCATGGTTGATGATCCAATACCTGCTTATGCCATTAGAAGACTTAGTCGCAAAAAAGTTTTCATTGTTCTAGATAATGTTGATGATCATCATGAACAATTAGAAAAACTTGTTGGAAGACATCATTGGTTTGGTCCAGGTACTAAAATCTTGGTAACAGCTAGAGATAAGCAAGTCTTTGGGAAGGAGGCAGATGATATATATAAACTTGAGGCTTTGAATTCTAACGAGGCTTTTCAACTTTTCTCATTGAACGCCTTCAAAAAAGACTATGGTAGTGACCCAAAGATGAGTGAGCTAGCAAAAGAAGTGACTCGATATGCAAGTGGAAATCCATTAGCCTTAAAAGTTTTAGGTTCCTTCTTGTATGACAAAAGTGAAGAAGCATGGAAAAGCCAATTGAAAAAGTTTCAAAAATTAACTTTTCCAAAAATTAATGATATCATAAAATTGAGTTTTGAAGGACTTGATATTGAAGAGGAAAATATTTTCTTGGATATTGCATGTTTTTTCAACGGTTGTTTTGTTAGGGATATAGTAACCTTGTTAGATGCATGTGGTTATTCAACGAAGATTGGATTGGACAGACTTAAAGATAAGGCTCTTTTAGATATTTGTGGAGAAACAATATCTATGCATCATTTGATAAAAGAAATGGGTCGACAAATTGTTCGCGAACAATCATTGAAGGATCCCCAAAAATGCGGTCGATTATGGGATTCTAATAAAATTTTTGAAATATTGAAGGAAAACAAGGGAGGTGATGCCATTGAAGGCATAATTCTAGAAGCTTCAGAACTACTTGAGGAGATATGCTTAAGTCCTCTTGCCTTGCGTCCAATGCCCAATTTGAAGTTTCTTATTTTTCATAAAGGTTTCAAAGAGAGCAAGTTAAAATTTCCTTGTGGTATAGAGTTTTTGCCAAATAAACTCAAGCTGTTGTGTTGGAAGGGATACCCTTCAAAGTCCTTGCCGGCAACATTCAAAAGTGAAAATCTTGTTCAAATAAAAATGACCTACAGCAAGTTGACAAAACTTTGGGATGGAGACCAGAATCTTGTGAATTTAAGAGCAATTGACCTCTATGGATCAAAAGACTTGATTGAACTCCCAAATTTTTCCAAGGCTATACATCTTGAAAGAGTTGAACTCAGTTTTTGTTCAAAATTGCGGTTTATCCATCCATCTATTTTATCTCTCCATAGTCTTGATCGTCTAAGGCTAAAACATTGCAAAGCCCTTACCAGCCTTACAAGCAATACACGTCTTAAATCACTCAGTGAACTCGACCTGGATGGTTGCTCAAGATTGAAAAAATTTTCAGTGACCTCAGAAAAATATTTGGTATTGAATCTTTCAGGAACACCCATCAATGATGAGTTGTTCTCATCAAGCAAAAATCTCAACAAAATTGATTTATTTCATCTATGTAAATTTGAAAGTGTGACAAGTCTTAAACCCTTGGTTGACCTGCGTAACCTTACATTTCGTAATGCTCATCATTGCAATATGCTAGCATCAAAACTATGTTCCCCATTCAACGAGACACGCTCTTTGGCAGTTGTAAGCATGATAAATGGTAATGAATTACTTGAACTGCGCCTGAGAACATCAGCTTATTATCTTTATTAG	2790	0.3742	MASTSSSTPSLQPRNKYDVFISFIGEDTSNCLNDQLSAHTSSIFGLRLLVVLGICVGAAIVLVLFLISLWFTKRNNNSSNHNSSHNPSIPNFSKEIQQIKLDPSRGMASSSSSATSSQSPKKYDVFISFRGEDTRLNFTSHLHEALRSKQIDTYIDYRLEKGDEVWPSLEKAIEDSILFLVIFSESYASSTWCLKELAKILDCSKNEDHLVMPVFYGVDPSHIRKQSGSYQKAFEQHEHKGLDKQQLQHWREALTHAANLSGWHCGVDRNEAELIKEIIKYVVQKLDDKYQSEDYLKDLIGIHRKMADVESLLYKDSNDDVRFIGIWGMGGVGKTTLAKALFDRFHSAYEGSCFLSSVMENSKKYGIGALKQKLILELLGDKESHIVMVDDPIPAYAIRRLSRKKVFIVLDNVDDHHEQLEKLVGRHHWFGPGTKILVTARDKQVFGKEADDIYKLEALNSNEAFQLFSLNAFKKDYGSDPKMSELAKEVTRYASGNPLALKVLGSFLYDKSEEAWKSQLKKFQKLTFPKINDIIKLSFEGLDIEEENIFLDIACFFNGCFVRDIVTLLDACGYSTKIGLDRLKDKALLDICGETISMHHLIKEMGRQIVREQSLKDPQKCGRLWDSNKIFEILKENKGGDAIEGIILEASELLEEICLSPLALRPMPNLKFLIFHKGFKESKLKFPCGIEFLPNKLKLLCWKGYPSKSLPATFKSENLVQIKMTYSKLTKLWDGDQNLVNLRAIDLYGSKDLIELPNFSKAIHLERVELSFCSKLRFIHPSILSLHSLDRLRLKHCKALTSLTSNTRLKSLSELDLDGCSRLKKFSVTSEKYLVLNLSGTPINDELFSSSKNLNKIDLFHLCKFESVTSLKPLVDLRNLTFRNAHHCNMLASKLCSPFNETRSLAVVSMINGNELLELRLRTSAYYLY	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr7g00571	929	Gene3D	-	117	287	IPR035897	-
	Accr7g00571	929	Gene3D	-	288	453	IPR027417	-
	Accr7g00571	929	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	294	553	IPR027417	-
	Accr7g00571	929	SUPERFAMILY	"Winged helix" DNA-binding domain	530	635	IPR036390	-
	Accr7g00571	929	PRINTS	Disease resistance protein signature	323	338	-	-
	Accr7g00571	929	PRINTS	Disease resistance protein signature	494	508	-	-
	Accr7g00571	929	PRINTS	Disease resistance protein signature	400	414	-	-
	Accr7g00571	929	PRINTS	Disease resistance protein signature	807	823	-	-
	Accr7g00571	929	FunFam	Disease resistance protein (TIR-NBS-LRR class)	119	288	-	-
	Accr7g00571	929	Pfam	TIR domain	122	301	IPR000157	GO:0007165
	Accr7g00571	929	Pfam	Leucine Rich Repeat	718	737	IPR011713	-
	Accr7g00571	929	SUPERFAMILY	Toll/Interleukin receptor TIR domain	114	263	IPR035897	-
	Accr7g00571	929	SUPERFAMILY	L domain-like	658	897	-	-
	Accr7g00571	929	Gene3D	Ribonuclease Inhibitor	648	834	IPR032675	-
	Accr7g00571	929	SMART	till_3	122	260	IPR000157	GO:0007165
	Accr7g00571	929	Pfam	NB-ARC domain	307	528	IPR002182	GO:0043531
	Accr7g00571	929	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	123	846	IPR044974	GO:0006952
	Accr7g00571	929	Gene3D	-	458	543	IPR042197	-
	Accr7g00571	929	ProSiteProfiles	TIR domain profile.	121	286	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr7g00571	Accr-Chr7	7991675	7995351	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr7g00571	119	859	WRKY Transcription Factor Family	AT4G12020	32.896	7.15e-95	327

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr7g00571	-		-	pcin:129290874	870.922