Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00554 ATGGGAAATCAGAAGCAGAAATGGACGGCGGATGAAGAAGAAGCATTACTTGCCGGAATAGCGAAGCACGGTCCTGGCAAGTGGAAGAACATTCTCAAGGATCCTGAGTTCGCGCCTTTCCTGACTTCCCGTTCCAACATTGACCTCAAGGATAAATGGAGGAACTTAAGTGTTAATCCTGCTGCTCAAGGTTCTAAAGATAAAGCAAGGAATCCAAAGATCAAAGCTATTATGCCTGCTCCAGTTGCTAGCATTCAAAACGCTACTTCTGCTGCTCCAGTTCACCAAAGTGCAGCTACTGATACCGCCAGTGAAGATGCTTCTCAAAAAGCGGATGTGAAGAATGCTCCACGGTATAATGGAATGGTTTTTGAAGCCCTGTCAACAATAAAAGACGCTAATGGTTGTGACATAAATACCATTGTTGGTTTCATTGAGAAAAGGCATGAGGTACCTCCAAATTTCAGAAGGGCATTAAGTACGAGGTTGAGGAGGCTTGTTGCTCAAGGGAAACTTGAGAAGGTACAAAATTGTTACAAAATAAAAAAGGACACTCCTTCTGGGGTTAAAACACTTCCTATGAAACAAAAGGACATCTGGCAACATCAACCACAAGCCTCTAGTATAGTGCCTTCTCATGAGACCGCCAAGGATGCTGCTGATACTGCTGCCTACAGACTTGCAGAAGCTGAAAACAAATCATTTCTGGCTGCTGAGGCAGTCAAAGAGGCAGAAAGGCTTGCAAAATTTGCTGAAGAAGCTGATGCAGTGTTACAACTAGCAAAAGAGATTTATGAACAATGCTCGCGCGGTGAAACTATTGTGTTGTCTTGA 834 0.4365 MGNQKQKWTADEEEALLAGIAKHGPGKWKNILKDPEFAPFLTSRSNIDLKDKWRNLSVNPAAQGSKDKARNPKIKAIMPAPVASIQNATSAAPVHQSAATDTASEDASQKADVKNAPRYNGMVFEALSTIKDANGCDINTIVGFIEKRHEVPPNFRRALSTRLRRLVAQGKLEKVQNCYKIKKDTPSGVKTLPMKQKDIWQHQPQASSIVPSHETAKDAADTAAYRLAEAENKSFLAAEAVKEAERLAKFAEEADAVLQLAKEIYEQCSRGETIVLS 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00554 277 SUPERFAMILY "Winged helix" DNA-binding domain 115 188 IPR036390 -
Accr7g00554 277 MobiDBLite consensus disorder prediction 88 106 - -
Accr7g00554 277 SUPERFAMILY Homeodomain-like 2 60 IPR009057 -
Accr7g00554 277 Gene3D - 2 58 - -
Accr7g00554 277 Gene3D - 112 200 IPR036388 -
Accr7g00554 277 MobiDBLite consensus disorder prediction 88 112 - -
Accr7g00554 277 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 115 183 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr7g00554 277 PANTHER SINGLE MYB HISTONE 4 1 276 IPR044597 GO:0003691
Accr7g00554 277 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Accr7g00554 277 Pfam linker histone H1 and H5 family 117 176 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr7g00554 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 62 IPR017930 -
Accr7g00554 277 FunFam Telomere repeat-binding factor 1 2 58 - -
Accr7g00554 277 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Accr7g00554 277 SMART sant 4 59 IPR001005 -
Accr7g00554 277 SMART h15plus2 113 178 IPR005818 GO:0000786|GO:0003677|GO:0006334
Accr7g00554 277 CDD SANT_TRF 6 56 - -
Accr7g00554 277 FunFam Telomere repeat-binding factor 1 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00554 Accr-Chr7 7829607 7833446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00554 1 277 Single Myb Histone (SMH) Gene Family AT1G72740 51.943 4.19e-88 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Accr7g00554 Linker_histone 6.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00554 K09422 - pvy:116109826 380.178