Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00539 ATGGATGGTGGAGCGCAGTACAATCCTCGCACGGTGGAAGAGGTTTTTAGGGATTTCAAGGGAAGAAGAGCGGGACTCATAAAAGCCCTTACCACCGATGTTGAAGAATTCTACAACCAATGTGATCCTGAGAAGGAGAATTTGTGCTTGTATGGTTATCCTAGTGAGCAGTGGGAAGTAAATTTACCTGCTGAAGAAGTTCCTCCAGAACTTCCAGAGCCTGTGCTGGGCATAAACTTTGCTAGGGATGGGATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTCCATAGTGATTCATGGTTACTTGCTATCTCTTTCTACTTTGGAGCCAGATTTGGGTTTGATAGAGCTGACAGGAAACGACTTTTCAATATGATTAATGAACTACCAACGATATTTGAAGTTGTTACGGGTACAGCAAAGAAACAACTTCAGGAGAAGTCTTCAGGTTCAAATCACGGTGGCAATAAATCGAAGTCCAACTCTAAAGTGCGAGGTTCAGAATCTGTGGGAAAGCATTCAAAGGCTATGCAACCAAGAGACGAGGAAGAGGAGCTGGATGAAGTAGATGAAGAAGATGAACATGGAGAGACTTTGTGCGGGGCATGCGGTGAGCATTATGGTACTGATGAATTCTGGATTTGTTGCGACATCTGCGAAAAATGGTTCCATGGAAAATGTGTGAAGATCACCCCAGCTAGGGCAGAGCATATCAAACAATACAAATGCCCGTCATGCAGTAACAAGAGGACTCGTCCCTGA 765 0.4405 MDGGAQYNPRTVEEVFRDFKGRRAGLIKALTTDVEEFYNQCDPEKENLCLYGYPSEQWEVNLPAEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLAISFYFGARFGFDRADRKRLFNMINELPTIFEVVTGTAKKQLQEKSSGSNHGGNKSKSNSKVRGSESVGKHSKAMQPRDEEEELDEVDEEDEHGETLCGACGEHYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRTRP 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00539 254 SMART PHD_3 200 248 IPR001965 -
Accr7g00539 254 MobiDBLite consensus disorder prediction 144 194 - -
Accr7g00539 254 ProSitePatterns Zinc finger PHD-type signature. 201 247 IPR019786 -
Accr7g00539 254 Pfam PHD-finger 201 250 IPR019787 -
Accr7g00539 254 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Accr7g00539 254 PANTHER CPG BINDING PROTEIN 8 253 IPR045104 GO:0006355|GO:0042393
Accr7g00539 254 SUPERFAMILY FYVE/PHD zinc finger 191 251 IPR011011 -
Accr7g00539 254 MobiDBLite consensus disorder prediction 144 166 - -
Accr7g00539 254 CDD PHD_AL_plant 200 250 IPR044104 -
Accr7g00539 254 ProSiteProfiles Zinc finger PHD-type profile. 198 250 IPR019787 -
Accr7g00539 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 191 249 IPR013083 -
Accr7g00539 254 MobiDBLite consensus disorder prediction 167 183 - -
Accr7g00539 254 FunFam PHD finger alfin-like protein 193 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00539 Accr-Chr7 7638994 7643249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00539 1 253 Alfin-like Transcription Factor Family AT3G42790 76.378 5.67e-129 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Accr7g00539 Alfin 4.2e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00539 K26274 - mof:131164480 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr7g00539 7 7638994 7643249 Accr6g00347 6 5471703 5475177 CCT
Accr6g00347 6 5471703 5475177 Accr7g00539 7 7638994 7643249 ECH
Accr7g00539 7 7638994 7643249 Accr7g00539 7 7638994 7643249 ECH