Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00523 ATGCAAACAAGAGACGAGGAAGAAGAACTGGATGAAGTCTATGAACATGGAGAGACTTTGTGCGGGGCATGTGGTCAGAATTATGGTACTGGTGAATTCTGGATTTGTTGCGACATCTGCGAAAAATGGTTCCACGGAAAATGTGTGAAGATCACCCCAGCTAGGGCACAGCGCATCAAACAATACAAATGCCCATCACGCAGTAACAAGAGGACTCGTTCCTGA 225 0.4622 MQTRDEEEELDEVYEHGETLCGACGQNYGTGEFWICCDICEKWFHGKCVKITPARAQRIKQYKCPSRSNKRTRS 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00523 74 PANTHER CPG BINDING PROTEIN 5 73 IPR045104 GO:0006355|GO:0042393
Accr7g00523 74 Pfam PHD-finger 21 66 IPR019787 -
Accr7g00523 74 SUPERFAMILY FYVE/PHD zinc finger 12 65 IPR011011 -
Accr7g00523 74 FunFam PHD finger alfin-like protein 13 69 - -
Accr7g00523 74 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 69 IPR013083 -
Accr7g00523 74 SMART PHD_3 20 68 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00523 Accr-Chr7 7457865 7458089 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00523 16 74 Alfin-like Transcription Factor Family AT3G42790 81.356 6.05e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Accr7g00523 PHD 1.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00523 K26274 - gmx:100777146 133.265