Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00493 ATGACCTCTCATGAACAAGCCCTAGTTTCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGTGCCGTTTTGGGTCTCGCCTTAGCCTATACCGCTGTCCGGTCCGTCCTCAAACTTACTGCGAACTCCGCCGCGCTTGACAAGCTTTGCGCCGCCCCTAATCTCTCCGTTTCTGACCTCCGATCACTTCTGGACAGTTCCGACTCTGACGGCAATTCCCAAAACAAGCTCGTTATTGTCCGTGGCACTGTCGAGGCCAAGTCTTCTGTTGAGAGTGGCTGGAAAAGCTTAAGACCTGGTGTCTTAGTTTCGAACGAGTCAGGCGATAGCGCTGTGGCTATTGAGAGAAGCCAAACGGTACCTTTTGTTCTCATTGATGGGGGACGACGATCTCATGCTGATTATGCTATTGTCAACTTAGAAGGCTCAAGACACCCCTTACCTCTTACTACAGTTTATCATAAATTGCAACCCACAAATGCTAGTCCTTACACATTCTTGCAGGCACTTTTTGGAAATCAGTATCCGGTTGGGATATTGGATGAAGAGAAAATTCTTCCTTTGGGAAAGGATGTCTATGCTGTTGGCATATGCTATTATCGAAATGGAATTGCTGAAATTAAGTCATGCAAAGAGTTGCCATATTTTCTGTCTGAATTGAACAAAGATCAGATGATTGTTGAGCTCACATTTAAATCAAAGGTACTCTTTTGGAGTGGTATCATTCTCGGTTCACTGTCAATTGGGATTCTCGGTTATGCTTTTATGAGAAACTGGAACAAGTGGAAACAATGGAGGCAACAGAGGGAGGCTCAGCAGCAAAGGCAAGTCAACCATGATGATGCTGAATTTGAAAATTTAGTGAATGAGATGGACGATGTTCCAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTGTTTATTCCCTGCGGGCATCTTGTGTGTTGTCAAGGGTGTGCCGTATCCGTTGAACGTAATGTGGCACCCAAGTGTCCTGTTTGTCGGCAGGAAATTCGCAATTCAGTGCGGATATTTGAATCATGA 1059 0.4542 MTSHEQALVSLFSQLALSFDGAVLGLALAYTAVRSVLKLTANSAALDKLCAAPNLSVSDLRSLLDSSDSDGNSQNKLVIVRGTVEAKSSVESGWKSLRPGVLVSNESGDSAVAIERSQTVPFVLIDGGRRSHADYAIVNLEGSRHPLPLTTVYHKLQPTNASPYTFLQALFGNQYPVGILDEEKILPLGKDVYAVGICYYRNGIAEIKSCKELPYFLSELNKDQMIVELTFKSKVLFWSGIILGSLSIGILGYAFMRNWNKWKQWRQQREAQQQRQVNHDDAEFENLVNEMDDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAVSVERNVAPKCPVCRQEIRNSVRIFES 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00493 352 SMART ring_2 300 339 IPR001841 -
Accr7g00493 352 Pfam E3 Ubiquitin ligase 115 251 IPR022170 GO:0004842|GO:0006996|GO:0016567
Accr7g00493 352 Pfam Zinc finger, C3HC4 type (RING finger) 298 345 - -
Accr7g00493 352 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 118 352 IPR044247 GO:0004842
Accr7g00493 352 CDD RING-HC_SPL2-like 295 341 - -
Accr7g00493 352 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 352 IPR013083 -
Accr7g00493 352 FunFam Baculoviral IAP repeat containing 7 309 350 - -
Accr7g00493 352 SUPERFAMILY RING/U-box 292 346 - -
Accr7g00493 352 ProSiteProfiles Zinc finger RING-type profile. 300 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00493 Accr-Chr7 6959051 6962266 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00493 291 349 C3H Transcription Factor Family AT3G06140 37.288 6.58e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00493 K15688 - gmx:100800058 463.766