Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00492 ATGACCTCTCATGAACAAGCCCTAGTTTCCCTTTTTTCCCAGCTAGCCTTGTCCTTCGACGGTGCCGTTTTGGGTCTCGCCTTAGCCTATACCGCTGTCCGGTCCGTCCTCAAACTTACTGCGAACTCCGCCGCGCTTGACAAGCTTTGCGCCGCCCCTAATCTCTCCGTTTCTGACCTCCGATCACTTCTGGACAGTTCCGACTCTGACGGCAATTCCCAAAACAAGCTCGTTATTGTCCGTGGCACTGTCGAGGCCAAGTCTTCTGTTGAGAGTGGCTGGAAAAGCTTAAGACCTGGTGTCTTAGTTTCGAACGAGTCAGGCGATAGCGCTGTGGCTATTGAGAGAAGCCAAACGTGTATATATACTGAATGGAAGGGCTTCTTTGGTTGGACTTCTGATATTCGTGCCTTATTTGTCAGAAATTTGAGGCAGCAAGAGTCTTCATCTTTAAGAACGGTACCTTTTGTTCTCATTGATGGGGGACGACGATCTCATGCTGATTATGCTATTGTCAACTTAGAAGGCTCAAGACACCCCTTACCTCTTACTACAGTTTATCATAAATTGCAACCCACAAATGCTAGTCCTTACACATTCTTGCAGGCACTTTTTGGAAATCAGTATCCGGTTGGGATATTGGATGAAGAGAAAATTCTTCCTTTGGGAAAGGATGTCTATGCTGTTGGCATATGCTATTATCGAAATGGAATTGCTGAAATTAAGTCATGCAAAGAGTTGCCATATTTTCTGTCTGAATTGAACAAAGATCAGATGATTGTTGAGCTCACATTTAAATCAAAGGTACTCTTTTGGAGTGGTATCATTCTCGGTTCACTGTCAATTGGGATTCTCGGTTATGCTTTTATGAGAAACTGGAACAAGTGGAAACAATGGAGGCAACAGAGGGAGGCTCAGCAGCAAAGGCAAGTCAACCATGATGATGCTGAATTTGAAAATTTAGTGAATGAGATGGACGATGTTCCAGATGGACAATTATGTGTTATATGCCTGATGAGGAGAAGGCGTTCTGTGTTTATTCCCTGCGGGCATCTTGTGTGTTGTCAAGGGTGTGCCGTATCCGTTGAACGTAATGTGGCACCCAAGTGTCCTGTTTGTCGGCAGGAAATTCGCAATTCAGTGCGGATATTTGAATCATGA 1161 0.4479 MTSHEQALVSLFSQLALSFDGAVLGLALAYTAVRSVLKLTANSAALDKLCAAPNLSVSDLRSLLDSSDSDGNSQNKLVIVRGTVEAKSSVESGWKSLRPGVLVSNESGDSAVAIERSQTCIYTEWKGFFGWTSDIRALFVRNLRQQESSSLRTVPFVLIDGGRRSHADYAIVNLEGSRHPLPLTTVYHKLQPTNASPYTFLQALFGNQYPVGILDEEKILPLGKDVYAVGICYYRNGIAEIKSCKELPYFLSELNKDQMIVELTFKSKVLFWSGIILGSLSIGILGYAFMRNWNKWKQWRQQREAQQQRQVNHDDAEFENLVNEMDDVPDGQLCVICLMRRRRSVFIPCGHLVCCQGCAVSVERNVAPKCPVCRQEIRNSVRIFES 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00492 386 ProSiteProfiles Zinc finger RING-type profile. 334 374 IPR001841 -
Accr7g00492 386 SMART ring_2 334 373 IPR001841 -
Accr7g00492 386 SUPERFAMILY RING/U-box 326 380 - -
Accr7g00492 386 CDD RING-HC_SPL2-like 329 375 - -
Accr7g00492 386 Pfam E3 Ubiquitin ligase 140 285 IPR022170 GO:0004842|GO:0006996|GO:0016567
Accr7g00492 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SPL2 1 386 IPR044247 GO:0004842
Accr7g00492 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 386 IPR013083 -
Accr7g00492 386 Pfam Zinc finger, C3HC4 type (RING finger) 332 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00492 Accr-Chr7 6959051 6962266 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00492 325 383 C3H Transcription Factor Family AT3G06140 37.288 6.94e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00492 K15688 - gmx:100800058 536.954