Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00427 ATGCAGGGAGCTGAATGGTCAGGTTCTTCTGCCGGTAACGTCTTCGTTGATGAATTCTACTTCTCAGCCCTTTTTGATGAAGATGAAATCTTCCCAATCTCCGACGAAAAATATGCAGAACAGATTCAGCTGCAAGAAGCCCTCATGTCCTCTGTTATTATCATGTCCAGGACATTCAGATGCGATAACGAGGATCAGATTAACGTTATGGATGTCGAAGATTCTTCCAGAAAGAGGAAAGGCAAGTTTATAGAGACCGGTGAATCTTCTAGAAGCTCTAGCAATAATATCATGAGCTTCTGTCAGATTTGCATGGAAGACAAACCTACGGAAAACATGTTCAGAGATAATAAAAGCTGTGAACATGTTTTCTGTTCGAACTGCGTGGCATCCTACGTGGCATCGAAGCTTCAAGAGAACATATCAATGGTGAAATGTCCCGACCCGAAATGCAGAGGAATAATCGAGCCACTCTTTTGTAGATCCATAATTCCAGAGGAGTTATTTGACAGGTGGGAAAATGCAGTGTGTGAGAATTTGATTCTGGGGTCTCAGAAATTTTATTGTCCCTTTAAGGATTGCTCGGCCATATTGGTGGACGACGGCGACGAGGTGGTGACATCCTCGGAATGCCCCAATTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGGTGACGTGGCACGCCGGGATGGATTGTGCAGAGTTTCAGATCAGCCAGAAAGTGGACCAGACACAAAACGATGATCTGTTGAAGGAACTTGCAAAGACCAAGAAATGGAGAAGATGCCCTCGATGCAGATTCTTCGTAGAGAAGACTGATGGATGCTCTCATATTTCCTGCAGGTGTGGTTATCAGTTTTGTTATGGATGCGGATCTGATTGGAATCAGCATCATGGGTGTGGTTTGTAG 909 0.4477 MQGAEWSGSSAGNVFVDEFYFSALFDEDEIFPISDEKYAEQIQLQEALMSSVIIMSRTFRCDNEDQINVMDVEDSSRKRKGKFIETGESSRSSSNNIMSFCQICMEDKPTENMFRDNKSCEHVFCSNCVASYVASKLQENISMVKCPDPKCRGIIEPLFCRSIIPEELFDRWENAVCENLILGSQKFYCPFKDCSAILVDDGDEVVTSSECPNCRRLFCAQCKVTWHAGMDCAEFQISQKVDQTQNDDLLKELAKTKKWRRCPRCRFFVEKTDGCSHISCRCGYQFCYGCGSDWNQHHGCGL 302
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00427 302 ProSiteProfiles Zinc finger RING-type profile. 101 150 IPR001841 -
Accr7g00427 302 SUPERFAMILY RING/U-box 180 236 - -
Accr7g00427 302 CDD Rcat_RBR_unk 258 294 - -
Accr7g00427 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 184 IPR013083 -
Accr7g00427 302 SUPERFAMILY RING/U-box 243 300 - -
Accr7g00427 302 FunFam RBR-type E3 ubiquitin transferase 96 183 - -
Accr7g00427 302 CDD BRcat_RBR_unk 183 235 - -
Accr7g00427 302 SMART ibrneu5 170 232 IPR002867 GO:0008270
Accr7g00427 302 SMART ibrneu5 243 300 IPR002867 GO:0008270
Accr7g00427 302 ProSiteProfiles TRIAD supradomain profile. 97 302 IPR044066 -
Accr7g00427 302 Gene3D - 235 301 - -
Accr7g00427 302 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 65 295 IPR031127 GO:0004842|GO:0016567
Accr7g00427 302 SUPERFAMILY RING/U-box 99 179 - -
Accr7g00427 302 Pfam IBR domain, a half RING-finger domain 250 300 IPR002867 GO:0008270
Accr7g00427 302 Pfam IBR domain, a half RING-finger domain 173 232 IPR002867 GO:0008270
Accr7g00427 302 Gene3D - 187 234 - -
Accr7g00427 302 ProSitePatterns Zinc finger RING-type signature. 120 129 IPR017907 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Accr7g00427 Accr-Chr7 5670326 5671523 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00427 101 299 C3H Transcription Factor Family AT2G31770 27.184 3.35e-19 85.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00427 K11975 - qsa:O6P43_018461 396.356