Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr7g00427 | ATGCAGGGAGCTGAATGGTCAGGTTCTTCTGCCGGTAACGTCTTCGTTGATGAATTCTACTTCTCAGCCCTTTTTGATGAAGATGAAATCTTCCCAATCTCCGACGAAAAATATGCAGAACAGATTCAGCTGCAAGAAGCCCTCATGTCCTCTGTTATTATCATGTCCAGGACATTCAGATGCGATAACGAGGATCAGATTAACGTTATGGATGTCGAAGATTCTTCCAGAAAGAGGAAAGGCAAGTTTATAGAGACCGGTGAATCTTCTAGAAGCTCTAGCAATAATATCATGAGCTTCTGTCAGATTTGCATGGAAGACAAACCTACGGAAAACATGTTCAGAGATAATAAAAGCTGTGAACATGTTTTCTGTTCGAACTGCGTGGCATCCTACGTGGCATCGAAGCTTCAAGAGAACATATCAATGGTGAAATGTCCCGACCCGAAATGCAGAGGAATAATCGAGCCACTCTTTTGTAGATCCATAATTCCAGAGGAGTTATTTGACAGGTGGGAAAATGCAGTGTGTGAGAATTTGATTCTGGGGTCTCAGAAATTTTATTGTCCCTTTAAGGATTGCTCGGCCATATTGGTGGACGACGGCGACGAGGTGGTGACATCCTCGGAATGCCCCAATTGCAGGAGGCTGTTCTGTGCTCAGTGCAAGGTGACGTGGCACGCCGGGATGGATTGTGCAGAGTTTCAGATCAGCCAGAAAGTGGACCAGACACAAAACGATGATCTGTTGAAGGAACTTGCAAAGACCAAGAAATGGAGAAGATGCCCTCGATGCAGATTCTTCGTAGAGAAGACTGATGGATGCTCTCATATTTCCTGCAGGTGTGGTTATCAGTTTTGTTATGGATGCGGATCTGATTGGAATCAGCATCATGGGTGTGGTTTGTAG | 909 | 0.4477 | MQGAEWSGSSAGNVFVDEFYFSALFDEDEIFPISDEKYAEQIQLQEALMSSVIIMSRTFRCDNEDQINVMDVEDSSRKRKGKFIETGESSRSSSNNIMSFCQICMEDKPTENMFRDNKSCEHVFCSNCVASYVASKLQENISMVKCPDPKCRGIIEPLFCRSIIPEELFDRWENAVCENLILGSQKFYCPFKDCSAILVDDGDEVVTSSECPNCRRLFCAQCKVTWHAGMDCAEFQISQKVDQTQNDDLLKELAKTKKWRRCPRCRFFVEKTDGCSHISCRCGYQFCYGCGSDWNQHHGCGL | 302 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr7g00427 | 302 | ProSiteProfiles | Zinc finger RING-type profile. | 101 | 150 | IPR001841 | - | |
| Accr7g00427 | 302 | SUPERFAMILY | RING/U-box | 180 | 236 | - | - | |
| Accr7g00427 | 302 | CDD | Rcat_RBR_unk | 258 | 294 | - | - | |
| Accr7g00427 | 302 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 184 | IPR013083 | - | |
| Accr7g00427 | 302 | SUPERFAMILY | RING/U-box | 243 | 300 | - | - | |
| Accr7g00427 | 302 | FunFam | RBR-type E3 ubiquitin transferase | 96 | 183 | - | - | |
| Accr7g00427 | 302 | CDD | BRcat_RBR_unk | 183 | 235 | - | - | |
| Accr7g00427 | 302 | SMART | ibrneu5 | 170 | 232 | IPR002867 | GO:0008270 | |
| Accr7g00427 | 302 | SMART | ibrneu5 | 243 | 300 | IPR002867 | GO:0008270 | |
| Accr7g00427 | 302 | ProSiteProfiles | TRIAD supradomain profile. | 97 | 302 | IPR044066 | - | |
| Accr7g00427 | 302 | Gene3D | - | 235 | 301 | - | - | |
| Accr7g00427 | 302 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 65 | 295 | IPR031127 | GO:0004842|GO:0016567 | |
| Accr7g00427 | 302 | SUPERFAMILY | RING/U-box | 99 | 179 | - | - | |
| Accr7g00427 | 302 | Pfam | IBR domain, a half RING-finger domain | 250 | 300 | IPR002867 | GO:0008270 | |
| Accr7g00427 | 302 | Pfam | IBR domain, a half RING-finger domain | 173 | 232 | IPR002867 | GO:0008270 | |
| Accr7g00427 | 302 | Gene3D | - | 187 | 234 | - | - | |
| Accr7g00427 | 302 | ProSitePatterns | Zinc finger RING-type signature. | 120 | 129 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr7g00427 | Accr-Chr7 | 5670326 | 5671523 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr7g00427 | 101 | 299 | C3H Transcription Factor Family | AT2G31770 | 27.184 | 3.35e-19 | 85.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr7g00427 | K11975 | - | qsa:O6P43_018461 | 396.356 |