Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00413 ATGAATGACTCGTTAGTGTCTAATGACAAATTGGGCGAATCTCCCGCAGTTGAAGTGACAGGAAAATTCATGGTGCTAGCTATAATAATCCTCTTCATGGTGGTTGTGTTTGTTTTGTTTCTCCATCTCTACGCCAAATGGTTCTGGTGGAGCATTGAAGACACCACTCCTCCGCCGCCGACTCGCCGTCGCCGTCGACGCCGCTTTGTCTTCAACCCGGGGCAAGATCCGGCGATTTACGGCGTCCAGAGAAGTGGGCTTGATCCTTCAGTGCTTTTGTCCTTACCAGTTGTAGTGTACCAACCTGAAAATTTCAAAGATGGTTTGGAATGTGCTGTTTGTCTCTCTGAGCTTGTTGAAGGAGAAAAAGCGAGGCTTTTACCCAAATGTAATCATGGGTTTCATGTGGATTGTATAGATATGTGGTTTCAATCCCATTGTACTTGTCCACTTTGCAGGGACCCAGTTGCTTCTGAAACCCCTAAATGCAATAGCACTTCAAGTGTTGGAGAAAATTCCGCAGAGAATATTGGTAGGCAATCACAAGCGGTAGAAAATTTTCAAAACTCAGGTTTTGCTGCTATGAGTGGTTCAGAGTCTCCAAATTTTCCAACTAATGTGTTGGTTTGGGGGAACCAGACTCAAGTTTGTTCTATTAATACATCTTCGGAAGAAGAGGGTCCTTCATCTTCTTCTACAACTACAGCTAGCAGTAGCAGTAACAGTAACAACAATAGACGCCATGAAATGATGGTGATTGATATACCAAGTGAGGTCAATTCTTCATCTTTGTCTCCTTCTGCAAGCAGGTTTGCTGAAGATGAGCTGAAATCACCAATGACCACAAGATTGAGGTCACTGAAGAGGCTTTTAAGCAGAGACAAAAGGTTAGGTCCTTGTAATCCTGGTCCTGGCTCTATAGATGTTGAACAAGCAGGGAGAGAACAAAGCTAG 954 0.4403 MNDSLVSNDKLGESPAVEVTGKFMVLAIIILFMVVVFVLFLHLYAKWFWWSIEDTTPPPPTRRRRRRRFVFNPGQDPAIYGVQRSGLDPSVLLSLPVVVYQPENFKDGLECAVCLSELVEGEKARLLPKCNHGFHVDCIDMWFQSHCTCPLCRDPVASETPKCNSTSSVGENSAENIGRQSQAVENFQNSGFAAMSGSESPNFPTNVLVWGNQTQVCSINTSSEEEGPSSSSTTTASSSSNSNNNRRHEMMVIDIPSEVNSSSLSPSASRFAEDELKSPMTTRLRSLKRLLSRDKRLGPCNPGPGSIDVEQAGREQS 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00413 317 CDD RING-H2_EL5-like 110 153 - -
Accr7g00413 317 SMART ring_2 111 152 IPR001841 -
Accr7g00413 317 FunFam RING-H2 finger protein ATL3 80 158 - -
Accr7g00413 317 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 23 273 - -
Accr7g00413 317 Pfam Ring finger domain 110 153 IPR001841 -
Accr7g00413 317 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Accr7g00413 317 MobiDBLite consensus disorder prediction 276 295 - -
Accr7g00413 317 MobiDBLite consensus disorder prediction 220 317 - -
Accr7g00413 317 SUPERFAMILY RING/U-box 94 159 - -
Accr7g00413 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 158 IPR013083 -
Accr7g00413 317 MobiDBLite consensus disorder prediction 220 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00413 Accr-Chr7 5489684 5490637 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00413 1 295 C3H Transcription Factor Family AT1G53820 43.408 9.87e-69 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00413 - - cave:132187344 316.235