Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00388 ATGGAATTGCTGATGCAAGATGTCAAAATGCATTCTGATGATAAGGAAGAAGACGAGGAGGAGGAGGAGGAGGAAGAAGAAGAAGACGAAGCAGAGATTGTTAGAGAGGAAAGCAGCAGCAACAGTAAGAATAATCATTACCTTCATTTCTCGCCAAATTACGAAACTAGCACTCATCGTCATCTTCATCAAAATTCATGGTTGGGGCTTCATCATGATCACCATCACTCTCCAGATGCTGCTACCACCACCATCGAATCTCACAATTCATCACCTCGATTAGGGTTACCATCAGCACCGGCCACCAATTTCACCGCCAATCACAGAAAACCGGACCTCATGGACTTGTCGCTCGGAGGAATTCGTATCGGAAAAGATGGTGAAGAACAAGAAGAAGGTAATTTCCAAGGAGGAGGTAGCGGCGGCGGTGGTGACGATGTTGGTGGTGCTGCTATTGAGAAAGAGCACATGTTCGATAAAGTGGTGACTCCGAGTGACGTAGGCAAGCTCAACCGCCTCGTGATACCAAAGCAATACGCAGAGAAGTACTTCCCTCTGGATTCATCCTCCAACGAGAAAGGCCTGCTGTTGAATTTTGAGGACCGCAACGGCAAGCTATGGCGGTTCCGGTACTCATACTGGAATAGTAGCCAGAGCTATGTTATGACCAAAGGTTGGAGCCGCTTCGTCAAGGAGAAGAAGCTCAACGCCGGAGACATTGTCTCGTTCCACCGCGGCGCCCGCGAGTCCTATCGGCACCGGTTGTACATAGATTGGAGGCGAAAACCTGATCACCACGGCCCACCCGGCGGCCCCGATCCCAGCCTGTTTGCACCTTTTCTTCTTCATCATCCGAATCAGTATCATCCGAACTCGCCGACGACGCAATTTTCTCAGTACTCTATCAGATGGGGCGGCCGATTGTTCTCGCTTCCCTCTCCGGCGCTACCGCCCCGACAGGTGAACCATAGTAATATGTTTCCCTTATATCATCATCAACAGCAACAAGAGCGACATCATCATCCATGGCAGTTCCAAGTCCATCATCATAATGCGATGAATTCGAGATCTGCAGGTTCGATGTATTCAAACTTGATAGGGCAACAAGAAGTAAGAAATGTTCCGATGATTATAGATTCTGTTCCAGTTGATCATTATCATTCTCATCAAAGCTGTTACCATGGCAAAAATAGTACTACTTCTACTAATAATACTACTGCTGCTGGTAAAAGACTTAGGCTATTTGGGGTGAACATGGAGTGTGCTTCTTCTTCATCACCCTCAGTAGTGGAAGAATCCAGATGTTGTAATGTGACAGTAATGGCTAACCCATCAATTTCATCTTCGTCTTCTTCTATTATCCCGCCACCTCTTCATCAGTATCTGAGGGTACCCCATGAGGATCCAATTTCATCGTCGTCGCCGGCGTCGGCCTTGTTATCATCAGCAAGATTTCAGGGTAGTCATCATCATCAGAAAGGGGAAACTTCGATGCCTTTTGATTTGGATCCCTCTTTGCATTACAGGCAGTGA 1533 0.4729 MELLMQDVKMHSDDKEEDEEEEEEEEEEDEAEIVREESSSNSKNNHYLHFSPNYETSTHRHLHQNSWLGLHHDHHHSPDAATTTIESHNSSPRLGLPSAPATNFTANHRKPDLMDLSLGGIRIGKDGEEQEEGNFQGGGSGGGGDDVGGAAIEKEHMFDKVVTPSDVGKLNRLVIPKQYAEKYFPLDSSSNEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLNAGDIVSFHRGARESYRHRLYIDWRRKPDHHGPPGGPDPSLFAPFLLHHPNQYHPNSPTTQFSQYSIRWGGRLFSLPSPALPPRQVNHSNMFPLYHHQQQQERHHHPWQFQVHHHNAMNSRSAGSMYSNLIGQQEVRNVPMIIDSVPVDHYHSHQSCYHGKNSTTSTNNTTAAGKRLRLFGVNMECASSSSPSVVEESRCCNVTVMANPSISSSSSSIIPPPLHQYLRVPHEDPISSSSPASALLSSARFQGSHHHQKGETSMPFDLDPSLHYRQ 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00388 510 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 428 IPR044800 GO:0003700
Accr7g00388 510 MobiDBLite consensus disorder prediction 1 52 - -
Accr7g00388 510 Pfam B3 DNA binding domain 158 262 IPR003340 GO:0003677
Accr7g00388 510 Coils Coil 1 39 - -
Accr7g00388 510 MobiDBLite consensus disorder prediction 69 97 - -
Accr7g00388 510 MobiDBLite consensus disorder prediction 38 52 - -
Accr7g00388 510 CDD B3_DNA 156 245 IPR003340 GO:0003677
Accr7g00388 510 MobiDBLite consensus disorder prediction 470 487 - -
Accr7g00388 510 SUPERFAMILY DNA-binding pseudobarrel domain 155 257 IPR015300 -
Accr7g00388 510 Gene3D - 151 267 IPR015300 -
Accr7g00388 510 ProSiteProfiles B3 DNA-binding domain profile. 158 261 IPR003340 GO:0003677
Accr7g00388 510 MobiDBLite consensus disorder prediction 14 34 - -
Accr7g00388 510 MobiDBLite consensus disorder prediction 465 510 - -
Accr7g00388 510 SMART B3_2 158 263 IPR003340 GO:0003677
Accr7g00388 510 MobiDBLite consensus disorder prediction 82 97 - -
Accr7g00388 510 FunFam B3 domain-containing protein 151 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00388 Accr-Chr7 5218833 5220365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00388 153 424 RAV Transcription Factor Family AT2G46870 49.648 1.22e-68 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Accr7g00388 B3 4.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00388 K09287 - gmx:100781424 330.102