Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00320 ATGACAATCCCAGATCTGAATTTTGGATTTAAATCTTTTATTGCAATCATGATTTTGTTCCTCATTGAACGCCTCTACCGCTTCATGTGCATCAGCCCTCGCATATATGCAGGTTTTGCATTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATCCGTGCATTAGACAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGTGGCCGTCATCGAGACGGGTCCAGAGCAAACCAGAAGCCCACAAAAACTTTATTTGTGATTAACTTTGACCCAATTCGGACTAGAATTCGTGATATAGAAAAACACTTTGAACCATATGGGAAAGTTCTTCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCCACTAAAGCTCTTGAGTGCACACATATGAGCAAGATACTGGATAGGGTGGTTTCGGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGTGACAGATACTATGACAGCCCCAGAAAAGGAGGGGGTTATGGAAGATCACCCAGTCCAGTTGCTCGGAGACGACCTAGTCCTGATTATGGTCGTCCACGAAGCCCTGTGTATGATAGGTACAATGGACCAGCATATGACAGACGTAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGGCGAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCAGAAGGTCCAGGACTTGA 762 0.4593 MTIPDLNFGFKSFIAIMILFLIERLYRFMCISPRIYAGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRIRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRKGGGYGRSPSPVARRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRARSPEYGRYRSRSPIRRSRT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00320 253 SMART rrm1_1 15 72 IPR000504 GO:0003723
Accr7g00320 253 SMART rrm1_1 94 160 IPR000504 GO:0003723
Accr7g00320 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 76 IPR000504 GO:0003723
Accr7g00320 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 164 IPR000504 GO:0003723
Accr7g00320 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 157 IPR000504 GO:0003723
Accr7g00320 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 38 62 IPR000504 GO:0003723
Accr7g00320 253 MobiDBLite consensus disorder prediction 168 253 - -
Accr7g00320 253 CDD RRM2_AtRSp31_like 94 163 - -
Accr7g00320 253 FunFam Serine/arginine-rich splicing factor RS31 85 175 - -
Accr7g00320 253 Gene3D - 32 86 IPR012677 -
Accr7g00320 253 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 34 108 - -
Accr7g00320 253 SUPERFAMILY RNA-binding domain, RBD 37 167 IPR035979 GO:0003676
Accr7g00320 253 Gene3D - 87 175 IPR012677 -
Accr7g00320 253 MobiDBLite consensus disorder prediction 212 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00320 Accr-Chr7 4237894 4239099 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00320 38 169 Eukaryotic Initiation Factors Gene Family AT1G49760 25.342 2.08e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00320 K12893 - gmx:100801043 352.058