Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00319 ATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAACGCTTGTTCGCTAAGTATGGGAGGATAGAACGCGTTGACATGAAATCGGGTTTTGCATTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATCCGTGCATTAGACAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGCAGGGTGAACGTGGCCGTCATCGAGACGGGTCCAGAGCAAACCAGAAGCCCACAAAAACTTTATTTGTGATTAACTTTGACCCAATTCGGACTAGAATTCGTGATATAGAAAAACACTTTGAACCATATGGGAAAGTTCTTCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCCACTAAAGCTCTTGAGTGCACACATATGAGCAAGATACTGGATAGGGTGGTTTCGGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGTGACAGATACTATGACAGCCCCAGAAAAGGAGGGGGTTATGGAAGATCACCCAGTCCAGTTGCTCGGAGACGACCTAGTCCTGATTATGGTCGTCCACGAAGCCCTGTGTATGATAGGTACAATGGACCAGCATATGACAGACGTAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGGCGAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCAGAAGGTCCAGGACTTGA 759 0.4743 MRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARQGERGRHRDGSRANQKPTKTLFVINFDPIRTRIRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRKGGGYGRSPSPVARRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRARSPEYGRYRSRSPIRRSRT 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00319 252 Gene3D - 1 85 IPR012677 -
Accr7g00319 252 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Accr7g00319 252 SMART rrm1_1 3 70 IPR000504 GO:0003723
Accr7g00319 252 SMART rrm1_1 93 159 IPR000504 GO:0003723
Accr7g00319 252 CDD RRM2_AtRSp31_like 93 162 - -
Accr7g00319 252 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 92 244 - -
Accr7g00319 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Accr7g00319 252 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 156 IPR000504 GO:0003723
Accr7g00319 252 Gene3D - 86 172 IPR012677 -
Accr7g00319 252 MobiDBLite consensus disorder prediction 211 244 - -
Accr7g00319 252 FunFam Serine/arginine-rich splicing factor RS31 86 174 - -
Accr7g00319 252 MobiDBLite consensus disorder prediction 167 252 - -
Accr7g00319 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 163 IPR000504 GO:0003723
Accr7g00319 252 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Accr7g00319 252 SUPERFAMILY RNA-binding domain, RBD 2 165 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00319 Accr-Chr7 4237894 4240722 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00319 4 231 Eukaryotic Initiation Factors Gene Family AT4G34110 27.907 1.60e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00319 K12893 - gmx:100801043 410.994