Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00318 ATGAGGCCGGTTTTTGTTGGGAACTTCGAGTACGATACCCGTCAATCTGAGCTGGAACGCTTGTTCGCTAAGTATGGGAGGATAGAACGCGTTGACATGAAATCGGGTTTTGCATTTGTGTATTATGAGGATGAGCGTGATGCTGAAGATGCAATCCGTGCATTAGACAATTTTCCATTTGGTTATGACAAGCGAAGGCTGTCTGTAGAGTGGGCTAGGGGTGAACGTGGCCGTCATCGAGACGGGTCCAGAGCAAACCAGAAGCCCACAAAAACTTTATTTGTGATTAACTTTGACCCAATTCGGACTAGAATTCGTGATATAGAAAAACACTTTGAACCATATGGGAAAGTTCTTCATGTTCGGATTCGTCGGAATTTTGCATTTGTGCAGTTTGAAACACAAGAAGATGCCACTAAAGCTCTTGAGTGCACACATATGAGCAAGATACTGGATAGGGTGGTTTCGGTGGAGTATGCTCTGAGGGATGATGATGAGAGGGGTGACAGATACTATGACAGCCCCAGAAAAGGAGGGGGTTATGGAAGATCACCCAGTCCAGTTGCTCGGAGACGACCTAGTCCTGATTATGGTCGTCCACGAAGCCCTGTGTATGATAGGTACAATGGACCAGCATATGACAGACGTAGGAGTCCTGATTATGGCAGGCCTAGGAGTCCTGATTATGGCAGGGCGAGGAGTCCTGAATATGGCAGATACCGCAGCCGCTCACCAATCAGAAGGTCCAGGACTTGA 756 0.4735 MRPVFVGNFEYDTRQSELERLFAKYGRIERVDMKSGFAFVYYEDERDAEDAIRALDNFPFGYDKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRIRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDDERGDRYYDSPRKGGGYGRSPSPVARRRPSPDYGRPRSPVYDRYNGPAYDRRRSPDYGRPRSPDYGRARSPEYGRYRSRSPIRRSRT 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00318 251 SMART rrm1_1 3 70 IPR000504 GO:0003723
Accr7g00318 251 SMART rrm1_1 92 158 IPR000504 GO:0003723
Accr7g00318 251 MobiDBLite consensus disorder prediction 166 251 - -
Accr7g00318 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Accr7g00318 251 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Accr7g00318 251 CDD RRM2_AtRSp31_like 92 161 - -
Accr7g00318 251 Gene3D - 85 171 IPR012677 -
Accr7g00318 251 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 243 - -
Accr7g00318 251 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Accr7g00318 251 SUPERFAMILY RNA-binding domain, RBD 2 163 IPR035979 GO:0003676
Accr7g00318 251 Gene3D - 1 84 IPR012677 -
Accr7g00318 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Accr7g00318 251 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Accr7g00318 251 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Accr7g00318 251 MobiDBLite consensus disorder prediction 210 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00318 Accr-Chr7 4237894 4240722 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00318 4 230 Eukaryotic Initiation Factors Gene Family AT4G34110 27.863 5.64e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00318 K12893 - gmx:100801043 415.616