Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00108 ATGAGCAATAGAGCTAGATATCCACCTGGGATTGGCGTAGGTCGAGGGGGAGGTATGAACTCGAACCCTGGGTTTCAAACGCGACCCCCTCAGCAACAACAGTATGTGCAAAGGCATTTAGCGCCGAGTCAACATCAGTATCAGCAGTTTCAACAGCAACATCAGCAGTTACAACAGCAGCAGCAGCAGCAACAACAACAATGGCTTAGAAGAACGCAATTAAGTGGCACTGATTCTAATGTAGTTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCAAGTTCTCAAGATTGGAAGGCAAGATTAAAGATACCAGCACCTGATACTCGCTATAGGACTGAGGATGTGACAGCAACTAAGGGAAATGAATTTGAAGATTACTTTTTGAAGCGCGAACTGCTTATGGGAATATATGAAAAGGGTTTTGAAAGGCCTTCTCCTATTCAAGAAGAAAGTATCCCAATTGCTCTTACTGGTAGTGATATTCTTGCTAGAGCCAAAAATGGAACTGGAAAAACAGCTGCCTTTTGCATTCCTGCTCTAGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGTGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTGGGAAAGCATCTGAAAATACAAGTCATGGTTACGACAGGAGGTACCAGCCTGAGAGATGATATCATGCGATTATATCAACCTGTTCATTTACTTGTTGGAACCCCAGGAAGAATATTAGATCTTGCGAAGAAGGGTGTCTGCATTTTGAAAGACTGTAATATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCGGAGTTCCAACCTTCAATAGAGCAATTGATTCATTTCCTGCCTCCAAACCGTCAAGTCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATTTCTTCATAAACCTTATATCATTAACCTTATGGATGAGTTAACTTTGAAAGGCATCACACAATTTTATGCATTCGTGGAAGAGAGACAGAAAGTCCACTGCCTCAATACACTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATATTCTGCAATTCGGTGAATCGGGTTGAGCTCCTTGCCAAGAAAATTACGGAACTAGGCTATTCATGCTTCTACATCCATGCAAAGATGCTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTTTGTACTGATCTTTTTACCAGGGGAATAGACATTCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGGCACCTTGGTCTTGCAGTTAACTTGATCACCTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCGCACATTGATCAGGCAATTTATTGCCGGTGA 1500 0.4093 MSNRARYPPGIGVGRGGGMNSNPGFQTRPPQQQQYVQRHLAPSQHQYQQFQQQHQQLQQQQQQQQQQWLRRTQLSGTDSNVVDEVEKTVQSEAVDSSSQDWKARLKIPAPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCNMLVMDEADKLLSPEFQPSIEQLIHFLPPNRQVLMFSATFPVTVKDFKDRFLHKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00108 499 CDD DEADc_DDX6 127 327 - -
Accr7g00108 499 FunFam ATP-dependent RNA helicase DDX6 330 499 - -
Accr7g00108 499 SMART ultradead3 144 340 IPR014001 -
Accr7g00108 499 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 496 IPR001650 -
Accr7g00108 499 MobiDBLite consensus disorder prediction 20 45 - -
Accr7g00108 499 Pfam DEAD/DEAH box helicase 150 314 IPR011545 GO:0003676|GO:0005524
Accr7g00108 499 Pfam Helicase conserved C-terminal domain 351 457 IPR001650 -
Accr7g00108 499 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 272 280 IPR000629 -
Accr7g00108 499 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 60 498 - -
Accr7g00108 499 Gene3D - 109 330 IPR027417 -
Accr7g00108 499 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Accr7g00108 499 FunFam ATP-dependent RNA helicase DDX6 106 329 - -
Accr7g00108 499 CDD SF2_C_DEAD 337 466 - -
Accr7g00108 499 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 326 IPR014001 -
Accr7g00108 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 195 479 IPR027417 -
Accr7g00108 499 Coils Coil 47 67 - -
Accr7g00108 499 Gene3D - 331 499 IPR027417 -
Accr7g00108 499 MobiDBLite consensus disorder prediction 1 45 - -
Accr7g00108 499 SMART helicmild6 376 457 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00108 Accr-Chr7 1230721 1235609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00108 127 496 Eukaryotic Initiation Factors Gene Family AT3G19760 39.247 1.37e-96 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00108 K12614 - qsa:O6P43_027218 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr7g00108 7 1230721 1235609 Accr7g00108 7 1230721 1235609 ECH