LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr7g00031	ATGGGGGTGGGAGGAAAATTCTGGGATTTGCTAAAGCCATATGCGCGAGCCGAAGGTTTCGATTTCTTAAGGGACAAGCGAGTCGCTGTGGACCTCTCCTTCTGGATTATCCAGCACCAGACTGCTATCAAGGAACATGCTCGGAAGCCCCATCTACGCCTTATCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGTATATCCAGTCTTCGTGGTAGATGGGACCCCATCGCCGTTGAAATCACAGACTAGGATTTCAAGGTTTTCCCGTTTTTCCGGCATTGTACTAAAAGATTTTCTGGTGGTTGAAGAAAGTGTTCCCGTTGAGAGGAACCGTGAATTTTCAAGGCATGTACAAGAATGTGTGGAACTTGTGGAGTTACTTGGAATGCCCGTACTATACGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTATGTAGATGCTTGCATCACATCTGATAGTGATGCCTTCCTATTTGGCGCAAAAAGCATTATAAAGAACTTCTGCTCTAATGGCAAAGAAGCTTTTGAATGCTACAATATGGAAGATATTGAAGCTGGTCTTGGGTTGAAGAGGAAACACCTCATAGCTATTTCTCTTCTTGTTGGAAATGATTATGATTTAACAGGCGTTCAGGGGATTGGGCTTGATACAGCTCTTCGTTTTGTTAGATGTTTCAGTGAAGAAGATGTATTGAATAGATTGCGAGAGATCGGCAATGGGAAAGTTTCATCAGCTCCCACCAGCATTAAATCTGCTGAAAATTGTGCTGACGTGGATAGGAACTTTCCAAGCCGAAAACAACTTCATTGTTCCTTTTGTGGGCATCCAGGCAGCAAAAGAGATCATATGAAATCTTCTTGTGAATTTTGCATGACAAGTGATGATGATGAAGGTTGCTTGAGAAAACCAAAAGGCTTTACTTGTGGCTGCCCTTCCTGTGACATGATTAGGAAACAAAAGGGGCAGAGAAGGATGGAAAATTGGTACGCTAAAGTTTGTCTCAAGATTGCAGAGGACCTCAAATTTCACAGAGATGAAATTATTGAATTGTACTTATGCAATGACAATGGGGGTTATCCTGCAAGTGATGGTCCTTGCATTTCATGGAGTAGACCCAAGATTGAGATGCTGATAGATTTTTTAAAATTTCATCAGAACTGGGATCCATCTTACGTTCGACGGCAGATTTTCCCTATGATGTCTACCATCTTTTTGAGAGACATGGCTAATACTCCGGTAGAAAGTCTGGTATTTGGGACATTTGAGTTTGGTTCAATACAACGTGTGAAGATAAGATATGGATATCAATTTTATGTTGTCAAGTGGAAACATGCAGTTGGCAACATTAGTTGTACAGTTCCATCACAAGAATCTAGCATGCAACAAGGAGATGGTAGTGAGCTTGATGAATTTGTGGATGTTCTAGATGATCCTAGTGTTTCTGATACGGGTGATGGGTGTAGCTTCCTGTTGACAGATGAAAATATGGATCTCGTGAGGGCTGCTTTTCCAGAAAAAGTTGAAAGCTTCTGGCAAGAGCAGGAATTGAAGGGATCGAAAACAAGAAAGAGTTGTACCCCACGATCTCTAGAGAAAGAGAGTCCATCATCATTAAACACAAGAAGTACTCAACTAAGCATCACAAAGTTCTACCGCTCAGTGAAAACGCAAAACCATTCAAAACAGCAAGTGGCATCTGATGGCTCTGATAACCTTGACAGTGGGAAAAGAACAATGTGCAGTCCAAATCTCACCAAATCAGCAAGGCGTCGCCTTTTATTTGAGTAA	1815	0.4198	MGVGGKFWDLLKPYARAEGFDFLRDKRVAVDLSFWIIQHQTAIKEHARKPHLRLIFFRTINLFSKFGVYPVFVVDGTPSPLKSQTRISRFSRFSGIVLKDFLVVEESVPVERNREFSRHVQECVELVELLGMPVLYAKGEAEALCAQLNSEGYVDACITSDSDAFLFGAKSIIKNFCSNGKEAFECYNMEDIEAGLGLKRKHLIAISLLVGNDYDLTGVQGIGLDTALRFVRCFSEEDVLNRLREIGNGKVSSAPTSIKSAENCADVDRNFPSRKQLHCSFCGHPGSKRDHMKSSCEFCMTSDDDEGCLRKPKGFTCGCPSCDMIRKQKGQRRMENWYAKVCLKIAEDLKFHRDEIIELYLCNDNGGYPASDGPCISWSRPKIEMLIDFLKFHQNWDPSYVRRQIFPMMSTIFLRDMANTPVESLVFGTFEFGSIQRVKIRYGYQFYVVKWKHAVGNISCTVPSQESSMQQGDGSELDEFVDVLDDPSVSDTGDGCSFLLTDENMDLVRAAFPEKVESFWQEQELKGSKTRKSCTPRSLEKESPSSLNTRSTQLSITKFYRSVKTQNHSKQQVASDGSDNLDSGKRTMCSPNLTKSARRRLLFE	604

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr7g00031	604	MobiDBLite	consensus disorder prediction	566	591	-	-
	Accr7g00031	604	SMART	xpgineu	128	198	IPR006086	GO:0004518
	Accr7g00031	604	SUPERFAMILY	PIN domain-like	6	213	IPR029060	-
	Accr7g00031	604	CDD	PIN_GEN1	2	202	-	-
	Accr7g00031	604	Gene3D	-	198	263	-	-
	Accr7g00031	604	Gene3D	-	5	197	-	-
	Accr7g00031	604	PANTHER	FLAP ENDONUCLEASE FAMILY MEMBER	1	542	IPR006084	-
	Accr7g00031	604	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	148	168	IPR006084	-
	Accr7g00031	604	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	203	218	IPR006084	-
	Accr7g00031	604	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	70	89	IPR006084	-
	Accr7g00031	604	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	25	39	IPR006084	-
	Accr7g00031	604	PRINTS	Xeroderma pigmentosum group G/yeast RAD superfamily signature	127	144	IPR006084	-
	Accr7g00031	604	SMART	xpgn3	1	96	IPR006085	GO:0004518
	Accr7g00031	604	MobiDBLite	consensus disorder prediction	527	551	-	-
	Accr7g00031	604	Pfam	XPG I-region	131	213	IPR006086	GO:0004518
	Accr7g00031	604	SUPERFAMILY	5' to 3' exonuclease, C-terminal subdomain	198	415	IPR036279	-
	Accr7g00031	604	FunFam	Flap endonuclease GEN-like 1	2	197	-	-
	Accr7g00031	604	Pfam	XPG N-terminal domain	1	90	IPR006085	GO:0004518
	Accr7g00031	604	FunFam	Flap endonuclease GEN-like 1	198	256	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr7g00031	Accr-Chr7	382918	387906	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr7g00031	1	232	Core DNA Replication Machinery Family	AT5G26680	29.297	6.11e-18	84.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr7g00031	K15338		-	gmx:100791251	784.637