Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr7g00018 ATGAAGCCCGTCTTTTGTGGAAACCTGGATTTCGATGCCCGCCAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGACAGAGTGGACTTGAAGTCTGGGTTTGCTTTTGTTTACATGGAAGATGAACGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAGTTTGGTAGAAAGGGGCGCCGAATACGTGTCGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGGAGATCTTCAACTAATATGAAACCGTCAAAGACATTGTTTGTCATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAGAGGCACTTTGATCCCTATGGGAAAATATTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCCAGTAGAGCATTGGAGACAACCAACATGAGCAAGTTACTGGATCGGGTTATAACAGTGGAGTATGCGATAAGAGATGATGATGATAGAAGAAATGGATATAGTCCTGATAGAAAAGGCCGTGACATATCCCCTGATGGGAGATATGGTCGCGGTAGATCACTTAGCCCTTATCGTAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCAACTTCCAGACCAGAACCAAGAGGAAGCCCCAAGTATGAACAAAACGAAAGCCCATCGAATGGAAGATATGACAGCCGATCACCGCCACCCCGCCGTGGGTCCCGTTCCCCAGGAGAAGTTGAATAG 768 0.4492 MKPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMKPSKTLFVINFDPVHTRTRDLERHFDPYGKILNIRIRRNFAFVQYESLEDASRALETTNMSKLLDRVITVEYAIRDDDDRRNGYSPDRKGRDISPDGRYGRGRSLSPYRRGRGSPDYGHGSNPTSRPEPRGSPKYEQNESPSNGRYDSRSPPPRRGSRSPGEVE 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr7g00018 255 SUPERFAMILY RNA-binding domain, RBD 4 170 IPR035979 GO:0003676
Accr7g00018 255 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Accr7g00018 255 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 247 - -
Accr7g00018 255 MobiDBLite consensus disorder prediction 169 255 - -
Accr7g00018 255 Gene3D - 89 175 IPR012677 -
Accr7g00018 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Accr7g00018 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Accr7g00018 255 MobiDBLite consensus disorder prediction 169 189 - -
Accr7g00018 255 FunFam Serine/arginine-rich splicing factor RS31 87 177 - -
Accr7g00018 255 Gene3D - 1 88 IPR012677 -
Accr7g00018 255 SMART rrm1_1 96 162 IPR000504 GO:0003723
Accr7g00018 255 SMART rrm1_1 3 70 IPR000504 GO:0003723
Accr7g00018 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Accr7g00018 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr7g00018 Accr-Chr7 260884 264486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr7g00018 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 26.012 2.01e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr7g00018 K12893 - gmx:100815452 422.935