Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01734 ATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGCCAGTTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGCGTAACAGATGGTTGGGTTTCAGAGATGGTTAAATTTTCACCCAAACTTAAAGTAATCAAGTATGTTGGAGGGAAAGAATACAGGTGCAGCCTACGAAGGAATATTCATGAACATGTAAAGGGACAATCGAATGTCTTGTTACCTTTTGACGTCTTATTAACAACTTATGATATAGCATTGATCGATCAGGATTTTCTTTCTCAAATACCGTGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCCAAGAGCACTATGTCATGCCAAGGCGGTTGTTGATGACGGGTACTCCTATTCAGAACAACCTTTCTGAACTCTGGGCATTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTAGAACAGTTCCTTTCCACATTCAAGGACATCAGTGATCCTACATCAGTTCAAAATACAGTGAAGGCAAAGGATCAACTTAAAATACTGAAAAATATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCTCTTACTGAGATAACTGTTATGGCACCCCTAGTCGGCCTGCAAAAAAAGGTCTACATGTCAATTTTGAGGAAGGAGCTTCCTAAGCTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATCCAGCTAAGGAAAGCATGTAGCCATCCTTATCTTTTCCCAGGTATTGAGCCTGAGCCTTATGAAGAGGGTGAACATCTGGTTCAGGCTAGTGGTAAATTGTTGATTCTGGACCAGCTTCTTCAGAAGTTACATTATTCTGGACACCGTGTCCTCCTTTTTGCTCAGATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTACGAAAGTATTCCTATGTGCGTCTTGATGGGTCAATCAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCTGTTTTGAATTCTGAAGTAGACCAAAATGGAGCCTTTGTCTTCTTGATCACAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACGGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAGCAGGCGTTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTATTGTGTATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGAGCAGAGAAGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAATATTCAGGAACATGAAGATGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAACAATGATGGAGAGCTTGAGGACATGTACTTGTCAGAAGTTAATGCTATGACTGATAAGGTGATTGCAATGCGTGATGCGCATATATCTGACAAGGATGACCGAAAATTTGAGATCAACCCCAGAAATATTCTAGAATCATATGATGCTAAGGAAGGAGCTTCTACTTCTTTTAACTCTGATCCCAGTCTTGATGAGGCTTCTTATCTCTCCTGGGTTAAAAAATTTGAGGAACTGTCAAAATCAAGTGGCGACGACTCAATCGTGGAGGTGAGAAATAGAGGAATTTTGGATGAGGAAAAGCGTCTAAAACTTGAGGCTGCAAGGAAGAAAGCAGAAGAAAAGAAGCTGTCTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGATCCCGTCACCCCTCCAGATGGTGGTAGTCCATCAGAAGCGGGATCTGTTAATTTTGTGTATGGAGATTGTACAGACCCATCGAACGTTTGTCCGTCTCAACCAGCTATGATATTCAGTTGTGTTGATACCTCTGGAAACTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGCGATGCCTATGAACGGGCTTCTGAACATGGGGACTTGCATCTTGGGGATCTACATCTTGTAAAGCTTGAAGATATCTGTGATGAACAAAATATGGATGGAAGTACTCCCATTTGGGTTGCTTTAGCTGTGGTTCAGTCTTACAATCCAAAGCGTAAAGTTCCCCGGAGTTCAATCTCACTTCCCCACTTGGAAAGTTGCTTATCAAAAGCAGCATTCTCAGCCAAACAAAATTCTGCATCAATACACATGCCCCGTGTAGGTTATCAAGATGGATCAGATCGTTCTAAGTGGTACACCATCGAGCGTCTTCTACGAAAATATGCTTCCATTTATGGCATCAACATATATGTATACTATTTTCGGCGACAATCTCAGTGA 2442 0.4144 MGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEMVKFSPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSNVLLPFDVLLTTYDIALIDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLQEHYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSTFKDISDPTSVQNTVKAKDQLKILKNILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDFLELRKYSYVRLDGSIRAEERFAAIRSFSGPSANSVLNSEVDQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDNIQEHEDEQKSGVGTGDLKSIIFGLHMFDPNENNDGELEDMYLSEVNAMTDKVIAMRDAHISDKDDRKFEINPRNILESYDAKEGASTSFNSDPSLDEASYLSWVKKFEELSKSSGDDSIVEVRNRGILDEEKRLKLEAARKKAEEKKLSKWEALGYHSLNVNDPVTPPDGGSPSEAGSVNFVYGDCTDPSNVCPSQPAMIFSCVDTSGNWGRGGMFNALNKLSLSIGDAYERASEHGDLHLGDLHLVKLEDICDEQNMDGSTPIWVALAVVQSYNPKRKVPRSSISLPHLESCLSKAAFSAKQNSASIHMPRVGYQDGSDRSKWYTIERLLRKYASIYGINIYVYYFRRQSQ 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01734 813 SMART ultradead3 1 168 IPR014001 -
Accr6g01734 813 Gene3D - 1 217 IPR038718 -
Accr6g01734 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 160 IPR014001 -
Accr6g01734 813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 302 473 IPR001650 -
Accr6g01734 813 CDD SF2_C_SNF 291 434 - -
Accr6g01734 813 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 548 IPR031053 GO:0003678|GO:0006281|GO:0006338
Accr6g01734 813 SMART helicmild6 328 423 IPR001650 -
Accr6g01734 813 CDD Macro_Poa1p-like_SNF2 639 799 - -
Accr6g01734 813 SUPERFAMILY Macro domain-like 640 807 IPR043472 -
Accr6g01734 813 Pfam Helicase conserved C-terminal domain 299 423 IPR001650 -
Accr6g01734 813 Gene3D Leucine Aminopeptidase, subunit E, domain 1 639 813 IPR043472 -
Accr6g01734 813 Gene3D - 218 528 IPR027417 -
Accr6g01734 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 205 IPR027417 -
Accr6g01734 813 Pfam SNF2-related domain 1 278 IPR000330 GO:0005524|GO:0140658
Accr6g01734 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 470 IPR027417 -
Accr6g01734 813 FunFam Putative helicase CHR10 216 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01734 Accr-Chr6 52721805 52731560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01734 1 482 RAD5 or RAD16-like Gene Family AT1G02670 26.148 5.31e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr6g01734 SNF2_N 1.5e-46 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01734 K20092 - gmx:100797182 1192.95