Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01733 ATGGGACTGGGCAAGACATTGCAAGCTATCTCCTTATTGAGCTATTTAAAAGAGTGCCAGTTGTCAGTTGGACCATTTTTGGTTTTATGTCCTCTAAGCGTAACAGATGGTTGGGTTTCAGAGATGGTTAAATTTTCACCCAAACTTAAAGTAATCAAGTATGTTGGAGGGAAAGAATACAGGTGCAGCCTACGAAGGAATATTCATGAACATGTAAAGGGACAATCGAATGTAAGGGTCTTGTTACCTTTTGACGTCTTATTAACAACTTATGATATAGCATTGATCGATCAGGATTTTCTTTCTCAAATACCGTGGCAGTATGCAATTATTGATGAAGCTCAAAGACTTAAAAACCCTTCAAGTGTTTTATATAATGTTCTCCAAGAGCACTATGTCATGCCAAGGCGGTTGTTGATGACGGGTACTCCTATTCAGAACAACCTTTCTGAACTCTGGGCATTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTAGAACAGTTCCTTTCCACATTCAAGGACATCAGTGATCCTACATCAGTTCAAAATACAGTGAAGGCAAAGGATCAACTTAAAATACTGAAAAATATATTAGGAGCTTTTATGCTTCGACGGACCAAGTCAAAGCTTATAGAGAGTGGAACTCTCGTGCTACCATCTCTTACTGAGATAACTGTTATGGCACCCCTAGTCGGCCTGCAAAAAAAGGTCTACATGTCAATTTTGAGGAAGGAGCTTCCTAAGCTACTTGCCCTATCTTCTGGAACTTCAAATCATCAGTCTCTGCAGAATATTGTGATCCAGCTAAGGAAAGCATGTAGCCATCCTTATCTTTTCCCAGGTATTGAGCCTGAGCCTTATGAAGAGGGTGAACATCTGGTTCAGGCTAGTGGTAAATTGTTGATTCTGGACCAGCTTCTTCAGAAGTTACATTATTCTGGACACCGTGTCCTCCTTTTTGCTCAGATGACCCAAACACTTGATATTTTGCAGGACTTTCTGGAGTTACGAAAGTATTCCTATGTGCGTCTTGATGGGTCAATCAGGGCTGAGGAGCGCTTTGCTGCAATAAGAAGTTTCAGTGGCCCTTCAGCTAATTCTGTTTTGAATTCTGAAGTAGACCAAAATGGAGCCTTTGTCTTCTTGATCACAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACGGTTGTATTCTATGAGCAAGATTGGAATCCTCAAGTAGACAAGCAGGCGTTGCAGCGAGCCCATCGGATTGGCCAGATGAACCATGTATTGTGTATAAACCTTGTTACAGAAATAACAGCAGAGGAGGTAATTATGCGGAGAGCAGAGAAGAAATTGCAGCTTAGCCTCAATGTTATAGGTGATAATATTCAGGAACATGAAGATGAACAAAAATCTGGAGTTGGGACTGGTGATTTAAAATCCATCATATTTGGCCTACATATGTTTGATCCTAATGAAAACAATGATGGAGAGCTTGAGGACATGTACTTGTCAGAAGTTAATGCTATGACTGATAAGGTGATTGCAATGCGTGATGCGCATATATCTGACAAGGATGACCGAAAATTTGAGATCAACCCCAGAAATATTCTAGAATCATATGATGCTAAGGAAGGAGCTTCTACTTCTTTTAACTCTGATCCCAGTCTTGATGAGGCTTCTTATCTCTCCTGGGTTAAAAAATTTGAGGAACTGTCAAAATCAAGTGGCGACGACTCAATCGTGGAGGTGAGAAATAGAGGAATTTTGGATGAGGAAAAGCGTCTAAAACTTGAGGCTGCAAGGAAGAAAGCAGAAGAAAAGAAGCTGTCTAAGTGGGAAGCTCTTGGATACCATTCATTGAATGTGAATGATCCCGTCACCCCTCCAGATGGTGGTAGTCCATCAGAAGCGGGATCTGTTAATTTTGTGTATGGAGATTGTACAGACCCATCGAACGTTTGTCCGTCTCAACCAGCTATGATATTCAGTTGTGTTGATACCTCTGGAAACTGGGGCCGTGGAGGAATGTTTAATGCACTGAACAAGCTTTCTTTGAGCATTGGCGATGCCTATGAACGGGCTTCTGAACATGGGGACTTGCATCTTGGGGATCTACATCTTGTAAAGCTTGAAGATATCTGTGATGAACAAAATATGGATGGAAGTACTCCCATTTGGGTTGCTTTAGCTGTGGTTCAGTCTTACAATCCAAAGCGTAAAGTTCCCCGGAGTTCAATCTCACTTCCCCACTTGGAAAGTTGCTTATCAAAAGCAGCATTCTCAGCCAAACAAAATTCTGCATCAATACACATGCCCCGTGTAGGTTATCAAGATGGATCAGATCGTTCTAAGTGGTACACCATCGAGCGTCTTCTACGAAAATATGCTTCCATTTATGGCATCAACATATATGTATACTATTTTCGGCGACAATCTCAGTGA 2448 0.4146 MGLGKTLQAISLLSYLKECQLSVGPFLVLCPLSVTDGWVSEMVKFSPKLKVIKYVGGKEYRCSLRRNIHEHVKGQSNVRVLLPFDVLLTTYDIALIDQDFLSQIPWQYAIIDEAQRLKNPSSVLYNVLQEHYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLEQFLSTFKDISDPTSVQNTVKAKDQLKILKNILGAFMLRRTKSKLIESGTLVLPSLTEITVMAPLVGLQKKVYMSILRKELPKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTQTLDILQDFLELRKYSYVRLDGSIRAEERFAAIRSFSGPSANSVLNSEVDQNGAFVFLITTRAGGVGLNLVAADTVVFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEITAEEVIMRRAEKKLQLSLNVIGDNIQEHEDEQKSGVGTGDLKSIIFGLHMFDPNENNDGELEDMYLSEVNAMTDKVIAMRDAHISDKDDRKFEINPRNILESYDAKEGASTSFNSDPSLDEASYLSWVKKFEELSKSSGDDSIVEVRNRGILDEEKRLKLEAARKKAEEKKLSKWEALGYHSLNVNDPVTPPDGGSPSEAGSVNFVYGDCTDPSNVCPSQPAMIFSCVDTSGNWGRGGMFNALNKLSLSIGDAYERASEHGDLHLGDLHLVKLEDICDEQNMDGSTPIWVALAVVQSYNPKRKVPRSSISLPHLESCLSKAAFSAKQNSASIHMPRVGYQDGSDRSKWYTIERLLRKYASIYGINIYVYYFRRQSQ 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01733 815 Pfam Helicase conserved C-terminal domain 301 425 IPR001650 -
Accr6g01733 815 FunFam Putative helicase CHR10 218 529 - -
Accr6g01733 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 207 IPR027417 -
Accr6g01733 815 Gene3D Leucine Aminopeptidase, subunit E, domain 1 641 815 IPR043472 -
Accr6g01733 815 Pfam SNF2-related domain 1 280 IPR000330 GO:0005524|GO:0140658
Accr6g01733 815 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 304 475 IPR001650 -
Accr6g01733 815 SMART helicmild6 330 425 IPR001650 -
Accr6g01733 815 SUPERFAMILY Macro domain-like 642 809 IPR043472 -
Accr6g01733 815 CDD SF2_C_SNF 293 436 - -
Accr6g01733 815 SMART ultradead3 1 170 IPR014001 -
Accr6g01733 815 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 1 549 IPR031053 GO:0003678|GO:0006281|GO:0006338
Accr6g01733 815 Gene3D - 1 219 IPR038718 -
Accr6g01733 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 472 IPR027417 -
Accr6g01733 815 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 162 IPR014001 -
Accr6g01733 815 Gene3D - 220 530 IPR027417 -
Accr6g01733 815 CDD Macro_Poa1p-like_SNF2 641 801 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01733 Accr-Chr6 52721805 52731560 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01733 1 484 RAD5 or RAD16-like Gene Family AT1G02670 26.232 9.39e-29 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Accr6g01733 SNF2_N 1.6e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01733 K20092 - gmx:100797182 1192.18