Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01650 ATGTCGAGCATACAAATGTCCCATGTAGATTTAGAGCAAGGAGGAGGTTACCATCGTTCGGTGGTCGCGAGTGATGTCAGCGCGGACGGGAGTGTATGCTTCTCCGACGCCGACGATGGGTCCTGCTATTCTCATTTCTATTCAACTTACGGTGGTTCATACGACGATTGTAGTTTCGCCGGCGTTTCTGACTCTGAGGTTAGGTGTGTTGCTGATTCTAGGAGAGCTTCTTCAGTGACTGATTGTTCGGTGGAAGTTGAAATTGAAACTGGGGTTCCTGAAATTAAGGTGCATTTGGCCAAAGTAGAGAGAGATTGTAGGATTTGTCACTTGGGTTTGGAGAGTGATAGCAATGATGAGTCTGGGGTTCCCATTGAATTGGGATGCTCTTGTAAGGATGATCTAGCTGCTGCTCACAAACACTGTGCTGAGGCCTGGTTCAAGATCAAAGGGAATAGGACATGTGAAATTTGCCATTCGGTCGCCCGGAATGTTTTTGGAGGGAATGAGGAGGGAACAGAACATTTAAGCAGTAGCAATAATGCTCCTACGGCAGCTGCAACAACAGTGTCCACAGCAGCACCTTCTGCAGAAACTCGAAGATTCTGGCATGGCCATAGGTTCCTGAATTTTCTCCTTGCTTGTATGGTTTTTGCTTTTGTCATATCATGGCTTTTTCACTTTAATGTACCTTCCACTTAA 702 0.4615 MSSIQMSHVDLEQGGGYHRSVVASDVSADGSVCFSDADDGSCYSHFYSTYGGSYDDCSFAGVSDSEVRCVADSRRASSVTDCSVEVEIETGVPEIKVHLAKVERDCRICHLGLESDSNDESGVPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVFGGNEEGTEHLSSSNNAPTAAATTVSTAAPSAETRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPST 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01650 233 ProSiteProfiles Zinc finger RING-CH-type profile. 98 165 IPR011016 GO:0008270
Accr6g01650 233 PANTHER ZINC FINGER, RING-CH-TYPE 23 232 - -
Accr6g01650 233 Pfam RING-variant domain 106 158 IPR011016 GO:0008270
Accr6g01650 233 SMART ringv_2 105 159 IPR011016 GO:0008270
Accr6g01650 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 166 IPR013083 -
Accr6g01650 233 SUPERFAMILY RING/U-box 103 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01650 Accr-Chr6 50683935 50686762 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01650 60 233 C3H Transcription Factor Family AT5G05830 61.143 4.60e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01650 - - qsa:O6P43_026440 360.533