Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01560 ATGGCTGAGGTGAAATCGGAGGAGTGTTGCCTGGAGAATAAACAGACTATTGCTGCTACTAGCTCTTCTATATCTGAAAGCAGTGGCAGTGCTCTACCCAAGTCCCCTGGGATATGTAGCCCAACATCCACACCACCCGCTCATCGGAGAACTTCTGGCCCTATAAGGCGTGCGAAAGGTGGTTGGACGCCAGAAGAGGACGAGACACTAAGGAAGGCTGTTGCAATTTTCAAGGGAAAGAATTGGAAGAAAATAGCGGAGTCTTTCCCTGATAGATCAGAAGTGCAATGTCTCCACAGATGGCAAAAAGTTCTTAACCCAGAACTTGTTAAAGGGCCTTGGACTCAGGAGGAGGATGATAAAATTGTTGAACTAGTGTCAAAATATGGGCCTACAAAATGGTCATTAATAGCCAAGTCGCTGCCTGGTCGTATAGGAAAACAGTGCCGAGAGCGATGGCATAACCATCTTAATCCTGACATAAAGAAGGATGCCTGGACTTCGGCAGAGGAATTAGCCATCATGAAGGCTCATAGTATACATGGGAACAAATGGGCTGAAATAGCTAAGGTCCTGCCTGGAAGGACTGATAATGCAATAAAGAACCACTGGAATAGTTCATTGAAGAAGAAGTTGGATTTTTATTTAACTACTGGACATCTTCCACCAGTTTCAAAGAATAGTCCAAAAGTTGATGTCAAAGACAAAATAATATGCTCTGCAACAGAAACGGTTCTTGGTGGTTCAAATAAAGTATTAGATGCAGCTACTGAAACATCATCAGAAACTGCAGAGATTAACAAACAAGAAGATAGTGATAAGAATCACTCAAGGCTTTTAGCAGCAGCAAGAGATGTTCGTGATTCTTCAAATGTTCTTGCAAATGAATCTGCTGATTCTGATTGCATAGAATGCAAGTCCAGATCCTCCACTTCAGATTTAAGCTGCAGCAAATCAGAACCAATGTCAAGAGATAATTTTGGAATGAATGGGGAACAAACACATGAGAAATCTGGATTCAATGGCAACCTAGCAATTGAGCATTGTATAAATAATAACAGGTTGTTCACAAAACCTTTTTCGCGGGAAGGTCCGACTTGTGGTTCTTTATGTTATGAGCCACTGCGGATGGATAATTTGGTTCCTTTAGATTCTCTTTATTTAAGTATCTTTTGTCTCCAAAATGACGACAGCTCTACTCCCATGATGTCTCCTTCTGGTTTCTTCACTCCACCTTGTGTGAAGGATCATGAATTTTTCAGACAAACTCCTGAATCGATGTTGAAAATGGCTGCTGAGTCTTACCCAAATATCCCTGCCATATTGAGGAAGAGAAGGACTGGGGTCCAGACCCAAGACACTCCCAGTAAAGTTGTGAAAGTTGATGGAGAATCACATGCTTCTGTTGGCCAGCAGAGAAATAAGAATAATACTAATTCTGAAATTGGGAAGTTCTCTGAGAGTCCAGCAAGCCATGGCCATGGCAATGGCCTTCCCAATAATAAAATTTTCAATGCATCTCGTCCCTATCGGTTAAGATCTAAGCGAACAGGAGTTGTCAAGTCTGTGGAGAAACAACTTGAGCTTGCATTTGACCAAGAAAAGCATGATGAAATCATGAGGAAAATGGGAAAGTCTTCAACATAG 1647 0.4183 MAEVKSEECCLENKQTIAATSSSISESSGSALPKSPGICSPTSTPPAHRRTSGPIRRAKGGWTPEEDETLRKAVAIFKGKNWKKIAESFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKIVELVSKYGPTKWSLIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTSAEELAIMKAHSIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLDFYLTTGHLPPVSKNSPKVDVKDKIICSATETVLGGSNKVLDAATETSSETAEINKQEDSDKNHSRLLAAARDVRDSSNVLANESADSDCIECKSRSSTSDLSCSKSEPMSRDNFGMNGEQTHEKSGFNGNLAIEHCINNNRLFTKPFSREGPTCGSLCYEPLRMDNLVPLDSLYLSIFCLQNDDSSTPMMSPSGFFTPPCVKDHEFFRQTPESMLKMAAESYPNIPAILRKRRTGVQTQDTPSKVVKVDGESHASVGQQRNKNNTNSEIGKFSESPASHGHGNGLPNNKIFNASRPYRLRSKRTGVVKSVEKQLELAFDQEKHDEIMRKMGKSST 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01560 548 Gene3D - 111 162 - -
Accr6g01560 548 MobiDBLite consensus disorder prediction 19 49 - -
Accr6g01560 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 105 IPR017930 -
Accr6g01560 548 Pfam Myb-like DNA-binding domain 59 105 IPR001005 -
Accr6g01560 548 Pfam Myb-like DNA-binding domain 111 157 IPR001005 -
Accr6g01560 548 Pfam Myb-like DNA-binding domain 163 206 IPR001005 -
Accr6g01560 548 MobiDBLite consensus disorder prediction 467 486 - -
Accr6g01560 548 SMART sant 162 210 IPR001005 -
Accr6g01560 548 SMART sant 110 159 IPR001005 -
Accr6g01560 548 SMART sant 58 107 IPR001005 -
Accr6g01560 548 CDD SANT 113 157 IPR001005 -
Accr6g01560 548 ProSiteProfiles Myb-like domain profile. 158 208 IPR001005 -
Accr6g01560 548 FunFam Transcriptional activator Myb isoform A 111 163 - -
Accr6g01560 548 FunFam Transcriptional activator Myb isoform A 58 110 - -
Accr6g01560 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 212 IPR017930 -
Accr6g01560 548 MobiDBLite consensus disorder prediction 256 275 - -
Accr6g01560 548 SUPERFAMILY Homeodomain-like 60 115 IPR009057 -
Accr6g01560 548 ProSiteProfiles Myb-like domain profile. 54 105 IPR001005 -
Accr6g01560 548 CDD SANT 62 105 IPR001005 -
Accr6g01560 548 MobiDBLite consensus disorder prediction 446 504 - -
Accr6g01560 548 Gene3D - 164 236 - -
Accr6g01560 548 Gene3D - 58 110 - -
Accr6g01560 548 FunFam Transcription factor MYB3R-2 164 230 - -
Accr6g01560 548 PANTHER MYB PROTEIN-RELATED 59 130 - -
Accr6g01560 548 ProSiteProfiles Myb-like domain profile. 106 157 IPR001005 -
Accr6g01560 548 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 161 IPR017930 -
Accr6g01560 548 MobiDBLite consensus disorder prediction 19 64 - -
Accr6g01560 548 SUPERFAMILY Homeodomain-like 108 204 IPR009057 -
Accr6g01560 548 CDD SANT 165 208 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01560 Accr-Chr6 48169192 48172758 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01560 2 538 MYB Transcription Factor Family AT3G09370 46.239 6.36e-139 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Accr6g01560 Myb_DNA-binding 4.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01560 K09422 - gmx:100793280 741.88