Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01476 ATGGCCTTGCAGAGGAAGGAGAACGCATGCGAAGATACAAATCTCGCAGAAAATGAACAAGAAGGATTCTCCAAATCCTTTGATGCAAATCTTGCAGACAATGAACAAGAAGAATTCTCCGAATCCTTTGTTTGCTGCGTTTGTCTGGATCTATTGTACAAGCCCATTGTACTGTCTTGTGGTCACATATCGTGCTTCTGGTGTGTCCATCGGTCAATGAGCCCCCTATGTGAGTCTCATTGTCCAATTTGTCGGTATCCATATTATCACTTTCCAACAATCTGTTGGATGCTTCACTTTTTGCTTCTGAAGATGTATCCTATTGCTTACAAGAGAAGGGAAATTCAAACTCTTGAGGTAGAAAAGAAAGACGACTGCTACTCTCCTCAATTTGATGATGATAATCTTGTATCATACGTTAAGTTTGATCATCCAAGTACTTCATCTTCCTGCTATGCTGGAAATCTGGCTTCCAACCCACAGAATGTAGGACTTTCGGCAAGTATGGGGCAATCAGGTTCCGAAACTCAAAAGCAACACAAGGGCACCATCTGTTTGAAAGATGTTTTTAGTGGAAGTCCTGAAGCTTCTGGGACTCCTGCTCAAGTAAAAATGATGCCTCAGAATGATAGGCAACAGAAGATATCAGTTGCAGATGTGGTGTGTTCAGCATGCAAGCAACTTCTTTTTCGTCCTGTTGTTCTTAACTGTGGTCATGTATTCTGTGAGTCTTGTATCAAGAACTCAGCCGATGAGATGCTTAGATGTCAAATTTGTCAACTTCCACATCCAAGGGGATTTCCGAAAGTTTGTTTGGAGCTTGATCACTTTATAAAGGAACAATTTCCTCAGGAATATGCAAAGCAAAGAGATGCCATTCAACTGAGGAATATCAGTGACAAACCTGAGACCCCTTCCTGTTCTCTGAATAAGGGTGGAGGAGGAAAAGCAGCATGGTGGTCTGATCCTCAGTCAAATGTACACGTTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCAATTGTTGGAGATAGATACAGATGCAAAGACTGTAAGGAGAAGGTTGGTTTTGATCTTTGTGCTGATTGTTATAAAATTCGCAGCAAGATTCCTGGTCGGTTCAATCAGCAGCACACTCCAGATCATGAGTTTGAGGTTAAGCAAATTAACATTATGCAGAACATAATGAGGCTGGTTACTGGACAGTTACGAGATGGTTCGATTGAAAATTTGCCTCTGGAAGGCATAGAGTTTAGACTTGAAGATCTGGATTTGGTCGGTGATGGTGATGGTGATGGTGATGGTGACGGAGAACATACCCAGAATGACTCGGAAGGCATTGATTGA 1347 0.4195 MALQRKENACEDTNLAENEQEGFSKSFDANLADNEQEEFSESFVCCVCLDLLYKPIVLSCGHISCFWCVHRSMSPLCESHCPICRYPYYHFPTICWMLHFLLLKMYPIAYKRREIQTLEVEKKDDCYSPQFDDDNLVSYVKFDHPSTSSSCYAGNLASNPQNVGLSASMGQSGSETQKQHKGTICLKDVFSGSPEASGTPAQVKMMPQNDRQQKISVADVVCSACKQLLFRPVVLNCGHVFCESCIKNSADEMLRCQICQLPHPRGFPKVCLELDHFIKEQFPQEYAKQRDAIQLRNISDKPETPSCSLNKGGGGKAAWWSDPQSNVHVGVGCDFCGMFPIVGDRYRCKDCKEKVGFDLCADCYKIRSKIPGRFNQQHTPDHEFEVKQINIMQNIMRLVTGQLRDGSIENLPLEGIEFRLEDLDLVGDGDGDGDGDGEHTQNDSEGID 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01476 448 PANTHER UNCHARACTERIZED 31 388 - -
Accr6g01476 448 SMART zz_5 327 373 IPR000433 GO:0008270
Accr6g01476 448 MobiDBLite consensus disorder prediction 427 448 - -
Accr6g01476 448 Gene3D - 321 387 IPR043145 -
Accr6g01476 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 145 IPR013083 -
Accr6g01476 448 ProSitePatterns Zinc finger RING-type signature. 237 246 IPR017907 -
Accr6g01476 448 ProSiteProfiles Zinc finger RING-type profile. 222 260 IPR001841 -
Accr6g01476 448 SUPERFAMILY RING/U-box 320 385 - -
Accr6g01476 448 Pfam RING-type zinc-finger 222 255 IPR027370 -
Accr6g01476 448 Pfam Zinc finger, ZZ type 328 366 IPR000433 GO:0008270
Accr6g01476 448 FunFam E3 ubiquitin-protein ligase PRT1 36 131 - -
Accr6g01476 448 FunFam E3 ubiquitin-protein ligase PRT1 209 304 - -
Accr6g01476 448 ProSiteProfiles Zinc finger RING-type profile. 45 85 IPR001841 -
Accr6g01476 448 SUPERFAMILY RING/U-box 217 263 - -
Accr6g01476 448 ProSiteProfiles Zinc finger ZZ-type profile. 328 392 IPR000433 GO:0008270
Accr6g01476 448 SMART ring_2 222 259 IPR001841 -
Accr6g01476 448 SMART ring_2 45 84 IPR001841 -
Accr6g01476 448 FunFam E3 ubiquitin-protein ligase PRT1 322 387 - -
Accr6g01476 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 305 IPR013083 -
Accr6g01476 448 SUPERFAMILY RING/U-box 35 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01476 Accr-Chr6 45641447 45647584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01476 30 85 C3H Transcription Factor Family AT1G74990 38.596 8.65e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01476 - - gmx:100782681 515.768