Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01460 ATGAAGCGCCCGATCGATGACGTCGTTGCGCCTTTGGCTTCTTCAACTTCTTCCTCAGCCGCTGCCGCACCTCCAAAGCCGGTGTTCTTAACGAAAGCTCAACGTGAACAACTGGCTCTTCAGCGACGCCAAGAAGAAATCGCCGAACAAAAACGCCGTCAGGAACAGCTTCTTTCTCGGAACCGCCCATCCGACCCAAACTCCGATTCTAAACCCTCCGATTCCGAGCGACGCGACCGTGACCGCGACCGTGACCGCGACCGTGACCGCGACCGCGACCGCGATCGGGATCGTGATAGAGAGCGGGAGCGAGAGCGGGACCGTGAGCGTGAAAGAGAGCGAGAGCGAGAGCGAGATAGGGCTCGTGATCGGGACCGTGAAACAGAGCGCAGGAATCGCGAGAGGGAGCGTGAAGAGGAGACTAAAGCCCGCGAGCGTGCTCGGCTGGAGAAATTGCAAGAGCGTGAGCGGGAGAAAGAGCTTGAAGCTATCAAGGAGCAGTATCTTGGTTCGAAGAAGCCTAAGAAGCGTGTTATCAAACCCAGTGAGAAGTTTAGGTTTTCCTTCGATTGGGAGAATACGGAGGATACTTCTCGTGACATGAATATTCTTTACCAGAATCCTCACGAAGCGCAGCTTCTCTTTGGTCGTGGCTTTCGTGCTGGCATGGACCGGCGTGAGCAGAAGAAACTTGCTGCTAAGAATGAGAAGGAGATGCGTGAACAGATCCGGAAGAAGGAGGGCGTGGAGGAGAAGCCCGAAGAGGCTGTTGCACAACGGCGAAAGGAGGCTGCTGCTGAACTCTATGACACCTTTGACATGAGAGTTGATCGCCATTGGAGCCAGAAGAAGCTTGAGGAGATGACTGAGAGGGATTGGCGTATATTTAGGGAGGATTTCAACATTTCCTACAAGGGTTCTAGAATTCCTCGTCCAATGCGTAGCTGGGTTGAGAGTAAGTTGAGTCCTGAGCTTTTGAAGGCCGTTGAGAAGGCTGGGTACAAGACCCCTTCTCCTATTCAGATGGCTGCCATTCCTCTTGGCCTTCAACAGCGTGATGTCATTGGTGTTGCAGAGACAGGTTCAGGGAAGACTGCTGCTTTTGTGCTTCCCATGCTGAGTTACATCACAAGGCTTCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGTCCCTATGCTGTTGTCATGGCGCCTACACGTGAACTTGCACAGCAGATTGAAGATGAGACCGTGAAGTTTGCTCAATTTCTTGGTATCAAAGTGGTTTCCATTGTTGGTGGACAGTCAATTGAAGAGCAAGGTTTTAGGATAAGGCAAGGTTGTGAAATTGTAATTGCCACTCCTGGTCGGTTGATTGATTGCTTGGAGAGGCGTTATGCTGTCCTAAATCAGTGTAATTATGTTGTTCTTGATGAGGCTGACCGCATGATTGATATGGGATTTGAGCCTCAAGTTATGGGTGTCCTGGATGCAATGCCTTCCAGCAATCTGAAACCAGAAAATGAAGATGAAGAGCTTGATGAAAAGAGGATTTACAGAACTACTTATATGTTCAGTGCCACCATGCCTCCTGCTGTTGAGCGGCTTGCTAGGAAATACTTGAGGAACCCCGTTGTGGTAACCATAGGCACTGCAGGAAAGGCTACAGATTTGATCAGCCAGCATGTAATTATGATGAAGGAGTCTGAAAAATTTTTCAAACTGCAACGGCTGCTTGATGAACTTAATGACAAGACAGCAATTGTATTTGTTAACACTAAGAAAAATGCTGATATGGTTGCAAAGAATTTGGATAGGGAAGGCTACCGTGTAACCACTCTGCATGGTGGCAAGTCACAGGAGCAGAGGGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTCTTGGTTGCTACTGATGTTGCAGGGCGTGGGATTGACATACCTGATGTGGCTCATGTCATAAACTATGACATGCCTGGGAATATTGAGATGTACACACATCGTATTGGACGTACTGGTCGTGCTGGGAAGACAGGTGTTGCTACAACGTTCCTGACTCTTCAAGACACTGATGTCTTTTATGACCTCAAACAGATGCTCATACAGAGTAATAGTCCCGTCCCTCCTGAATTGGCCAGACACGAGGCTTCAAAATTCAAGCCAGGAGGTATTCCTGATAGACCACCTAGACGAAATGACACTGTATTTGCACACTGA 2205 0.4884 MKRPIDDVVAPLASSTSSSAAAAPPKPVFLTKAQREQLALQRRQEEIAEQKRRQEQLLSRNRPSDPNSDSKPSDSERRDRDRDRDRDRDRDRDRDRDRDRERERERDRERERERERERDRARDRDRETERRNREREREEETKARERARLEKLQEREREKELEAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNILYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKEGVEEKPEEAVAQRRKEAAAELYDTFDMRVDRHWSQKKLEEMTERDWRIFREDFNISYKGSRIPRPMRSWVESKLSPELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQFLGIKVVSIVGGQSIEEQGFRIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFFKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGGIPDRPPRRNDTVFAH 734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01460 734 Pfam DEAD/DEAH box helicase 339 529 IPR011545 GO:0003676|GO:0005524
Accr6g01460 734 CDD SF2_C_DEAD 552 681 - -
Accr6g01460 734 CDD DEADc_DDX23 325 541 - -
Accr6g01460 734 MobiDBLite consensus disorder prediction 67 155 - -
Accr6g01460 734 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 314 342 IPR014014 GO:0003724
Accr6g01460 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 390 693 IPR027417 -
Accr6g01460 734 Coils Coil 226 252 - -
Accr6g01460 734 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 246 711 - -
Accr6g01460 734 MobiDBLite consensus disorder prediction 231 257 - -
Accr6g01460 734 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 567 711 IPR001650 -
Accr6g01460 734 SMART helicmild6 591 672 IPR001650 -
Accr6g01460 734 FunFam probable ATP-dependent RNA helicase DDX23 275 544 - -
Accr6g01460 734 Gene3D - 545 729 IPR027417 -
Accr6g01460 734 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 469 477 IPR000629 -
Accr6g01460 734 MobiDBLite consensus disorder prediction 1 155 - -
Accr6g01460 734 MobiDBLite consensus disorder prediction 38 59 - -
Accr6g01460 734 FunFam probable ATP-dependent RNA helicase DDX23 545 733 - -
Accr6g01460 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 235 493 IPR027417 -
Accr6g01460 734 Coils Coil 98 164 - -
Accr6g01460 734 MobiDBLite consensus disorder prediction 709 734 - -
Accr6g01460 734 Pfam Helicase conserved C-terminal domain 567 672 IPR001650 -
Accr6g01460 734 Coils Coil 30 60 - -
Accr6g01460 734 SMART ultradead3 333 555 IPR014001 -
Accr6g01460 734 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 345 540 IPR014001 -
Accr6g01460 734 Gene3D - 275 544 IPR027417 -
Accr6g01460 734 MobiDBLite consensus disorder prediction 702 734 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01460 Accr-Chr6 45207743 45209947 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01460 315 708 Eukaryotic Initiation Factors Gene Family AT1G72730 32.658 3.47e-60 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01460 K12858 - gmx:100799264 1109.36