Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01455 ATGCCATTAGCGGAAAGCAATCGAGAGTCACTTGCCGGATTAACCCTCGACGACGTGTTAGCCAACCGAGCTGCAGCCGCGACGTCGAGCCATCAGCTCACAAGAACAACAACAACAACAACCACCAATCATCGAACCCTGCTTGACATCATCCGTGAAGACGAGTCTAACAAAAAAGATCGCAAATCTTGGAAAGCTTTCAAAGACAAGCTTCGGCTTAAACGCGTCGAATCTGCTCGGACTTCCTCTGTCCTAATTCCAGCTTCCGATATCCCTTTCCCGATCCGGAATTACAGAAACCTTCCGACACAGCTTCACCGTCGTAGCTCCATCCGAGTCCTTACATTCTCCGACGTCACGACTCACTCTATGGCAGATCCCACAGAAGAAGCCATCAAAAGTTCCAACCTCGGCGCCACAATGATGACGCGCCAGAGATCCACGCGCCAACAGGTCGGGGATGCAATTTTCGTCGACGAGAAACTCAAGCCGCAGCTGTCCCGCCCGGGCTCCTCACGTCTGGGGTCGTTACGCTCGGATTCCATCCGGCGAGAGCGCGTGGCGTCGTTTCGTGATAGTAACATTAACAACGATGACGACGATGAGGATGGAGACGGCCCGACGCGCCGCCCGAGGGAGGGGAGGCAGATGTCTGCTAGGGAAGCCGTGGCAGCGCAGGAGGCAGCGGAGGCGGCGGCTGCGGAGGAGGAGGAAGATGAAGATGAAGATGAAGGGCCTTTCGGGAATGGAGGAGGAGGAAGAGGAGGTGCGGTGACGATGTCGCTGATGGACTTGTTGGAGGAGACGGATCGGCAAATGGGACTGCAAGGATCGACGTACAGAATGGACTTCGACGACGACGACGATTACGATGATTTTGATGAAGATGAAGATGATGATTATGAAGAAGGTGAAGAGCACGATTGTTGCGTGTGTATGGTGAAGCATAGAGGTTCGTCATTTGAACCGTGTGGGCACTCATTTTGCAGGATGTGTTCTCGGGAGCTCATTGTGAGCAAGGGAAATTGTCCTCTCTGCAACAATTTTATCCTGGAGATTCTTGAGGTTTTCTGA 1074 0.5317 MPLAESNRESLAGLTLDDVLANRAAAATSSHQLTRTTTTTTTNHRTLLDIIREDESNKKDRKSWKAFKDKLRLKRVESARTSSVLIPASDIPFPIRNYRNLPTQLHRRSSIRVLTFSDVTTHSMADPTEEAIKSSNLGATMMTRQRSTRQQVGDAIFVDEKLKPQLSRPGSSRLGSLRSDSIRRERVASFRDSNINNDDDDEDGDGPTRRPREGRQMSAREAVAAQEAAEAAAAEEEEDEDEDEGPFGNGGGGRGGAVTMSLMDLLEETDRQMGLQGSTYRMDFDDDDDYDDFDEDEDDDYEEGEEHDCCVCMVKHRGSSFEPCGHSFCRMCSRELIVSKGNCPLCNNFILEILEVF 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01455 357 Pfam Zinc finger, C3HC4 type (RING finger) 306 350 - -
Accr6g01455 357 CDD RING-HC 309 346 - -
Accr6g01455 357 ProSiteProfiles Zinc finger RING-type profile. 309 347 IPR001841 -
Accr6g01455 357 Coils Coil 219 244 - -
Accr6g01455 357 MobiDBLite consensus disorder prediction 231 246 - -
Accr6g01455 357 MobiDBLite consensus disorder prediction 188 258 - -
Accr6g01455 357 PANTHER OS01G0917900 PROTEIN 7 357 - -
Accr6g01455 357 MobiDBLite consensus disorder prediction 284 300 - -
Accr6g01455 357 SUPERFAMILY RING/U-box 297 353 - -
Accr6g01455 357 MobiDBLite consensus disorder prediction 279 300 - -
Accr6g01455 357 MobiDBLite consensus disorder prediction 203 217 - -
Accr6g01455 357 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 357 IPR013083 -
Accr6g01455 357 SMART ring_2 309 346 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01455 Accr-Chr6 45144636 45145709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01455 259 357 C3H Transcription Factor Family AT3G07120 59.223 4.75e-32 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01455 - - pcin:129287682 405.601