Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01442 ATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGACGCAATGGGATTTCCAAAGGCAAAGGCAACTCGAGCACTCTATTATTCTGGCAATAATAATGTAGTTGATGCTATAAATTGGATGGTTGAACATGAGAGTGATCCTGATATTGATGAGATTCCATTGGTAGACTTAGATATTGAGATTGGTTCTTCTCAATCATTCCCTATAACAGAAGAAATGGAAATCAAAGCACAGAAGCTAAGGAAGATTAGTTCTAATAATTCATTCCCTATCACAGAAGAATCTCAAATCAAAGAACAGAAGCTAAGTAGGGAACAATTGCATAAGATGAAAGAAGAGAAAGAAAAGAAATTGGAGATAGAAAGGGAAAAGGAGAGAATCCAAGCAGGTAAGAAACTCAATGAGATGAAGCGAATTGCTGAAGAGAATGAAAGGCAACGAAATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAGTCATACAGAAACTAGAACAGGATAAGTTAAACAGAAGGTCTAAACTCGGGTTGCCCCTAGAAGGCCATGCAACCGTAAAAACTTCAGCTACAACAGTACAGAAAGAACAGAAACTGCAGAATCCTAAGCCTGTTTACACCGTTACAAAAGTCGATCTCTTGACAGAATGTTTGAGGTCCCTCAAGCGTAACCACCAGGATGAGCATGCGAGAGTCAGAAGGGCCTTTGAAACGCTCTTAATTTATGTTGGGAATGTTGTCAAGAATCCCAACCAGGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCAGGAAAGAGTTGGGAGTTTGATTGGAGGTGTGGAATTTCTTGAACTATGCGGGTTTGAGAGAATGGGTGACTTTCTGTATCTTCCTGAGGAAAAGTTGGACATAACACTACTAAATTCAGCTGGATTGGTGTTGAAGTCTGCTATTACAAATCCCTTCTTTGGACTCTTTAGCACTCGGACATTGTTATAA 1011 0.3956 MAVPKVDKKMLEELDAMGFPKAKATRALYYSGNNNVVDAINWMVEHESDPDIDEIPLVDLDIEIGSSQSFPITEEMEIKAQKLRKISSNNSFPITEESQIKEQKLSREQLHKMKEEKEKKLEIEREKERIQAGKKLNEMKRIAEENERQRNIALRKAEKEEEKRAREKVIQKLEQDKLNRRSKLGLPLEGHATVKTSATTVQKEQKLQNPKPVYTVTKVDLLTECLRSLKRNHQDEHARVRRAFETLLIYVGNVVKNPNQEKYRKIRLSNPLFQERVGSLIGGVEFLELCGFERMGDFLYLPEEKLDITLLNSAGLVLKSAITNPFFGLFSTRTLL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01442 336 Pfam UBA/TS-N domain 7 42 IPR015940 -
Accr6g01442 336 SMART uba_6 7 45 IPR015940 -
Accr6g01442 336 Gene3D - 7 53 - -
Accr6g01442 336 PANTHER F13M7.16 PROTEIN 1 329 - -
Accr6g01442 336 Pfam PUB domain 239 307 IPR018997 -
Accr6g01442 336 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Accr6g01442 336 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Accr6g01442 336 Coils Coil 100 133 - -
Accr6g01442 336 Coils Coil 136 179 - -
Accr6g01442 336 SMART PGNneu 242 303 - -
Accr6g01442 336 CDD UBA_PUB_plant 6 53 - -
Accr6g01442 336 Gene3D - 222 319 - -
Accr6g01442 336 SUPERFAMILY PUG domain-like 214 326 IPR036339 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01442 Accr-Chr6 44647699 44650971 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01442 1 330 C2H2 Transcription Factor Family AT1G04850 53.453 1.03e-91 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01442 - - gmx:100781260 407.142