Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01441 ATGGCTGTTCCAAAAGTGGACAAAAAGATGCTTGAAGAACTTGACGCAATGGGATTTCCAAAGGCAAAGGCAACTCGAGCACTCTATTATTCTGGCAATAATAATGTAGTTGATGCTATAAATTGGATGGTTGAACATGAGAGTGATCCTGATATTGATGAGATTCCATTGGTAGACTTAGATATTGAGATTGGTTCTTCTCAATCATTCCCTATAACAGAAGAAATGGAAATCAAAGCACAGAAGCTAAGGAAGATTAGTTCTAATAATTCATTCCCTATCACAGAAGAATCTCAAATCAAAGAACAGAAGCTAAGGGAACAATTGCATAAGATGAAAGAAGAGAAAGAAAAGAAATTGGAGATAGAAAGGGAAAAGGAGAGAATCCAAGCAGGTAAGAAACTCAATGAGATGAAGCGAATTGCTGAAGAGAATGAAAGGCAACGAAATATAGCCTTGCGGAAAGCAGAGAAAGAAGAAGAGAAAAGAGCAAGGGAAAAAGTCATACAGAAACTAGAACAGGATAAGTTAAACAGAAGGTCTAAACTCGGGTTGCCCCTAGAAGGCCATGCAACCGTAAAAACTTCAGCTACAACAGTACAGAAAGAACAGAAACTGCAGAATCCTAAGCCTGTTTACACCGTTACAAAAGTCGATCTCTTGACAGAATGTTTGAGGTCCCTCAAGCGTAACCACCAGGATGAGCATGCGAGAGTCAGAAGGGCCTTTGAAACGCTCTTAATTTATGTTGGGAATGTTGTCAAGAATCCCAACCAGGAAAAATACAGGAAGATCCGATTGAGCAACCCATTATTCCAGGAAAGAGTTGGGAGTTTGATTGGAGGTGTGGAATTTCTTGAACTATGCGGGTTTGAGAGAATGGGTGACTTTCTGTATCTTCCTGAGGAAAAGTTGGACATAACACTACTAAATTCAGCTGGATTGGTGTTGAAGTCTGCTATTACAAATCCCTTCTTTGGACTCTTTAGCACTCGGACATTGTTATAA 1008 0.3958 MAVPKVDKKMLEELDAMGFPKAKATRALYYSGNNNVVDAINWMVEHESDPDIDEIPLVDLDIEIGSSQSFPITEEMEIKAQKLRKISSNNSFPITEESQIKEQKLREQLHKMKEEKEKKLEIEREKERIQAGKKLNEMKRIAEENERQRNIALRKAEKEEEKRAREKVIQKLEQDKLNRRSKLGLPLEGHATVKTSATTVQKEQKLQNPKPVYTVTKVDLLTECLRSLKRNHQDEHARVRRAFETLLIYVGNVVKNPNQEKYRKIRLSNPLFQERVGSLIGGVEFLELCGFERMGDFLYLPEEKLDITLLNSAGLVLKSAITNPFFGLFSTRTLL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01441 335 SUPERFAMILY PUG domain-like 213 325 IPR036339 -
Accr6g01441 335 SMART uba_6 7 45 IPR015940 -
Accr6g01441 335 Pfam UBA/TS-N domain 7 42 IPR015940 -
Accr6g01441 335 Pfam PUB domain 238 306 IPR018997 -
Accr6g01441 335 Coils Coil 95 132 - -
Accr6g01441 335 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 5 46 IPR015940 -
Accr6g01441 335 SUPERFAMILY UBA-like 5 56 IPR009060 GO:0005515
Accr6g01441 335 SMART PGNneu 241 302 - -
Accr6g01441 335 Gene3D - 7 53 - -
Accr6g01441 335 Gene3D - 221 318 - -
Accr6g01441 335 CDD UBA_PUB_plant 6 53 - -
Accr6g01441 335 Coils Coil 135 178 - -
Accr6g01441 335 PANTHER F13M7.16 PROTEIN 1 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01441 Accr-Chr6 44647699 44650971 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01441 1 329 C2H2 Transcription Factor Family AT1G04850 50.000 2.51e-92 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01441 - - gmx:100781260 407.142