Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01433 ATGAGCACTCCAGCAGTCAGGGGGTCTGGTCTTAGAAGTGCTCGAAGGAGGAAGACAGTTTTGAACTTGGACCTGAACTGTTTCCCACCAGGTGAGAATCAGGAACAGGGGGGACCTTCAACTCAACATGTGCCTCAAGAAGTTCAAACTGGCCAGCAACTACCAGTTGCACAACCAGTGATGATTGATGTGGAGGCCATTGAAGATGATGAGGTTGTTGAATCCAGTGCCAGGGCTTTTGCTGAGGCTAAAAACAATTTGAGAAGAAACCGTAGGAGGACTATATTTGATGTGGATTTAGAAGAATGGACTGGAGCAATCAATAATGGTTTCAACAAACGCAGAAGAAGTTCCTCAAACCAAACAATTATTAACTGTGATCTTTATGTAAACCTTGAAGCCAGTAACAGTTCTATGACGGAAAACATAAGAATGCCACCAGAACCTCCAGTCAATCCTGTCTTTAATTGCCCAATATGTATGGGCCCATTGGTAGAAGAAATGTCAACAAGATGTGGTCATATTTTTTGCAACAATTGCATTAGGTCTGCAATAAAAGTGCAAAGCAAATGCCCCTCCTGCAGGAAAAGGGTTACTGTGAAAGAGCTTAGAAGGGTGTTTCTGCCAGCAACTAGTTGA 639 0.4319 MSTPAVRGSGLRSARRRKTVLNLDLNCFPPGENQEQGGPSTQHVPQEVQTGQQLPVAQPVMIDVEAIEDDEVVESSARAFAEAKNNLRRNRRRTIFDVDLEEWTGAINNGFNKRRRSSSNQTIINCDLYVNLEASNSSMTENIRMPPEPPVNPVFNCPICMGPLVEEMSTRCGHIFCNNCIRSAIKVQSKCPSCRKRVTVKELRRVFLPATS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01433 212 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 - -
Accr6g01433 212 MobiDBLite consensus disorder prediction 33 49 - -
Accr6g01433 212 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Accr6g01433 212 SUPERFAMILY RING/U-box 156 201 - -
Accr6g01433 212 PANTHER ELFLESS, ISOFORM B 10 212 - -
Accr6g01433 212 MobiDBLite consensus disorder prediction 25 49 - -
Accr6g01433 212 SMART ring_2 157 194 IPR001841 -
Accr6g01433 212 ProSiteProfiles Zinc finger RING-type profile. 157 195 IPR001841 -
Accr6g01433 212 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 211 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01433 Accr-Chr6 44572030 44577236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01433 12 211 C3H Transcription Factor Family AT5G48655 49.505 4.27e-46 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01433 K22651 - cave:132188663 262.692