Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01430 ATGCTACCTCCCCGTCAACAATCTCGGGCTGGAGGACTGCAAACTTCTCTATCCCTCGTTTCTTCAGATCCTCGTCTCTCTCCTGAGGAACCCAGATCAAACTCTGACAATATTCGAGAATCCCCTACTGAAAGTGCTAGTTCACGAGAAACTTGGCCCACTGCTGAAGCTACTGCAGGAAAGAAGATGGATAATGGGAAGGCTGAGAATGATTTCCCTGAACAGTCAGTCATCCGTCGTGTTTCTAGTGCTGACAAAATCACTCTTCAGGACATAGGAAGAGAACGGGTTGACATGATCTCTGAAAAGATGGACCATCTACCTGAAGAATTTTTAGAACAGCTGAAGAACAGTCTTCGAGTGATCCTTGAGGGAGGGAATGGTTCACAGCACAGGGAGGAATTCTTCAATTTGCAGAAGCTTGTTCAAAGTAGAACTGATTTAACGGCCAAGACCTTGATTAGAGCACATCGTGTGCAACTTGAAATTCTTGTTGCTATTAACACTGGAATTCAGGCATTTTTGCATCCCAACATCAGTCTCTCACAAACTTCCCTTATTGAGATCTTTGTGTACAAGAGATGCAGAAACATAGCCTGTCAAAACCTGCTTCCTGCTGATGACTGTACCTGTGAAATATGCACCAGCAGAAATGGGTTCTGCAATCTCTGCATGTGCGTGATCTGCAACAAGTTCGACTTTGAAGTAAATACGTGCCGCTGGATTGGGTGTGATTTATGCTCTCATTGGACTCATACAGATTGTGCCATTCGTGATCAGCTTATTTGCATGGGCCCTTCTGCAAAGAGTGGCGCAGGACCAAGTGAAATGGTTTTTAGGTGCCATGCATGCAAGAGGACTTCAGAGCTGTTGGGCTGGGTTAAAGATGTTTTTCAGCATTGTGCCCCATCTTGGGATGGGGAGGCTTTAATGAGGGAACTTGATTCTGTTAGTAGGATCTTTCATGGTAGTAAAGACCCCAGAGGGACGAAACTATTCTGGAAGTGTGATGATCTAAAGGAGAAAATGAAGAGTGGAAGAGTGGAGCCAAATGCTGCCTGCAGTGCAATATTGATGTTTTTCCAAGAGCTTGAGGTGGACTCTCCAAAGAGCCTTGAAAATGGAGAAAGCGGAAGGATGATTGCTCCACAGGAGGCATGCAATAGAATTGCTGATGTGGTGCAGGAGGCTATAAGAAAAATGGAATTGGTAGCTGATGAGAAGATGAAAATGTTCAAGAAGGCTCGCTTGGCTCTTGAGGCTTGTGATCGAGACTTGGCAGATAAGGCAAGGGAAGCAGCAGAACTCAAGATGGACAGGCAAAAAAAGAAATTACAGATAGAAGAACTGGAGAGAATTGTAAGGCTGAAAACTGCAGAGGCTGATATGTTCCAGCTTAAGGCTAATGAGGCTAAACGAGAGGCTGAGAGGCTTCAGAGGATTGCTCTTGCCAAATCGGACAAATCAGAGGAAGAATATACTAGCAACTACCTGAAACAACGATTAAGTGAGGCTGAAGCTGAGAAGCAATATCTCTATGAGAAGATCAAATTGCAGGAGGGTTCTCGTTCTTGGCAGAGCAGCGGTGGTGACCCATCTCAGATTCTGATGTATTCCAAAATCCATGATCTGCTCTCCCAAGGCAGATAG 1650 0.4497 MLPPRQQSRAGGLQTSLSLVSSDPRLSPEEPRSNSDNIRESPTESASSRETWPTAEATAGKKMDNGKAENDFPEQSVIRRVSSADKITLQDIGRERVDMISEKMDHLPEEFLEQLKNSLRVILEGGNGSQHREEFFNLQKLVQSRTDLTAKTLIRAHRVQLEILVAINTGIQAFLHPNISLSQTSLIEIFVYKRCRNIACQNLLPADDCTCEICTSRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDQLICMGPSAKSGAGPSEMVFRCHACKRTSELLGWVKDVFQHCAPSWDGEALMRELDSVSRIFHGSKDPRGTKLFWKCDDLKEKMKSGRVEPNAACSAILMFFQELEVDSPKSLENGESGRMIAPQEACNRIADVVQEAIRKMELVADEKMKMFKKARLALEACDRDLADKAREAAELKMDRQKKKLQIEELERIVRLKTAEADMFQLKANEAKREAERLQRIALAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKLQEGSRSWQSSGGDPSQILMYSKIHDLLSQGR 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01430 549 MobiDBLite consensus disorder prediction 1 74 - -
Accr6g01430 549 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 27 547 IPR004082 -
Accr6g01430 549 Pfam Coiled-coil region of Oberon 413 545 IPR032535 -
Accr6g01430 549 Coils Coil 419 488 - -
Accr6g01430 549 Pfam PHD - plant homeodomain finger protein 195 318 IPR032881 -
Accr6g01430 549 PIRSF UCP025218 1 548 - -
Accr6g01430 549 MobiDBLite consensus disorder prediction 1 23 - -
Accr6g01430 549 SMART PHD_3 225 285 IPR001965 -
Accr6g01430 549 MobiDBLite consensus disorder prediction 38 54 - -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 448 468 IPR004082 -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 145 160 IPR004082 -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 232 252 IPR004082 -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 186 207 IPR004082 -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 487 509 IPR004082 -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 305 324 IPR004082 -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 103 125 IPR004082 -
Accr6g01430 549 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 160 175 IPR004082 -
Accr6g01430 549 CDD PHD_OBE1_like 225 284 IPR047578 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01430 Accr-Chr6 44507825 44509967 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01430 195 297 PHD Gene Family AT5G57380 31.731 1.19e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01430 - - gmx:100795450 966.066