Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01396 ATGGCGAAGCCGGGAGTGTTGGAATCTGATCCAACGGTGACGGCGAAGGCAATGGAGCTGAAGAAGGAGTTGCAGAGATTGGTGAAGTCAATTGTTGAAGATGAAGATCATCATTACGGCATCGAGACCATCGATACAACAATGGAGACGCTGTCGTTGCTGAAGGAGCTGAAGCTCAGCAAGAGATCATCGACGACGACGACGACAACGACGCCGGCGCCGTCGTCTTCGTCACTGTCTTTGAAGCTCCGACATAAAACCAGCTTGAATTGCCCGGAAGAATTCAAATGCCCTCTTTCCAAGCAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGGCAGACATATGACAGAACCTTCATTCAAAAGTGGCTGAAAGCTGGGAACCGGACATGTCCTCGGACAAGGCAAGTCCTCTCACACACAGTTCTCACTCCGAATTATCTAATAAGCGAAATGATTGAGCAATGGTGTAGAAGCCAAGGGATTGAATTTTCCAACCATGTTCATTATATCAATGAGGAAGCAATCCTAGAACCAGACCATGGCCATTTTCTTTCTTTGCTTGAGAAAGTTTCTTCATCAGCACTTTCTGAACAGAAAGCCTCCGCGAAGGAGCTCCGGATTCTGACAAAGAAAATGCCTTCTTTCCGGGTATTCTTTGGCGAGTTTCCAGAAGCCATTCCCAAATTGCTCAAACCGATCTGTGGTAGTCACTCTCTGGGTAATATCCACCCTGACCTCCAAGAAGATGTCATCACAACAATCCTTAATATCTCCATCCATGACAACAACAAGAAGCTTGTAGCAGACACTCCAATGGTAATCCCTCTCCTAATGAGGGCATTGAGATCAGGAACAATAGCAACACGAAGCAATGCCGCGGCTGCCCTTTTCACTTTATCGGCTCTTGACTCAAACAAGGAACTCATAGGCAAATCTGGAGCTTTGAAGCCTCTGATTGACCTGTTAGAAGAAGGACATCCCTTAGCCATGAAAGATGTTGCATCAGCAATTTTCACCTTATGTGTCCTCCAAGAGAACAAGGCAAGAGCTGTGAAGGACGGCATGGTGAAGGTGATCGTAAAGAAGATCGTTGACCGGGTCTACGTAGATGAGCTACTAGCCATCCTCGCACTTCTCTCGAGTCACCAGAAGGCGATTCAGGACATGGGAGAGCTTGGAGCTGTCCCTAGCTTGCTGAGCTTAATCAGAGAGACCACTTGTGAAAGAAACAAAGAGAATTGCATAGCAATACTTCAGACTATATGTCTTTTTGACAGAACCAGGTTGAAGGAGATGAAGGAAGAAGAAAACAGACATAGAACAATCTCCGAGCTTGCACAAAATGGAACTTCAAGGGCTAAGAGAAAGGCTGCTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATTACACACACTGCTTAA 1431 0.4598 MAKPGVLESDPTVTAKAMELKKELQRLVKSIVEDEDHHYGIETIDTTMETLSLLKELKLSKRSSTTTTTTTPAPSSSSLSLKLRHKTSLNCPEEFKCPLSKQLMRDPVIVASGQTYDRTFIQKWLKAGNRTCPRTRQVLSHTVLTPNYLISEMIEQWCRSQGIEFSNHVHYINEEAILEPDHGHFLSLLEKVSSSALSEQKASAKELRILTKKMPSFRVFFGEFPEAIPKLLKPICGSHSLGNIHPDLQEDVITTILNISIHDNNKKLVADTPMVIPLLMRALRSGTIATRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFTLCVLQENKARAVKDGMVKVIVKKIVDRVYVDELLAILALLSSHQKAIQDMGELGAVPSLLSLIRETTCERNKENCIAILQTICLFDRTRLKEMKEEENRHRTISELAQNGTSRAKRKAAGILERLNRVVNITHTA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01396 476 SMART arm_5 304 344 IPR000225 GO:0005515
Accr6g01396 476 SMART arm_5 262 303 IPR000225 GO:0005515
Accr6g01396 476 SMART arm_5 384 425 IPR000225 GO:0005515
Accr6g01396 476 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 164 IPR013083 -
Accr6g01396 476 Gene3D - 373 471 IPR011989 -
Accr6g01396 476 ProSiteProfiles U-box domain profile. 90 164 IPR003613 GO:0004842|GO:0016567
Accr6g01396 476 SUPERFAMILY ARM repeat 183 466 IPR016024 -
Accr6g01396 476 CDD RING-Ubox_PUB 92 144 IPR045210 -
Accr6g01396 476 FunFam RING-type E3 ubiquitin transferase 175 472 - -
Accr6g01396 476 PANTHER U BOX DOMAIN-CONTAINING 19 466 - -
Accr6g01396 476 FunFam RING-type E3 ubiquitin transferase 90 164 - -
Accr6g01396 476 Gene3D - 225 372 IPR011989 -
Accr6g01396 476 Pfam U-box domain 92 161 IPR003613 GO:0004842|GO:0016567
Accr6g01396 476 SMART Ubox_2 94 157 IPR003613 GO:0004842|GO:0016567
Accr6g01396 476 SUPERFAMILY RING/U-box 88 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01396 Accr-Chr6 43909584 43913120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01396 153 476 U-box Gene Family AT3G07360 60.909 4.85e-135 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01396 - - pcin:129287872 787.334