LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Accr6g01394	ATGGAGACACGGTCAGCGGAGAAATGGTTCGAGGAAGCGGAGGAACGGAGATATTATGAAGATGACTTCGAGACCGCAATCGATCTTTATACCAACGCAATCAATCTGTGCCCTAACAATGCGGTTTATTTCACGAATCGCGCTTTCTGTCACATTAAGATAGGAAAATGGCAAGAAGCAGTGGACGACAGCCGGAGGGCTATTGAACTAGACAACACGTCAGCCGAGGCCCATTCTATTTTGGGAGAAGCATTGCTAGAAAAAACTGAACATGTTGAAGCGGTCAGAGAATTGAAGGAGGCTGTTAATCTTGAGAGGGCTAATGGCGGTACAGGAGAATTCTATGAGTGGAAATATATCCGGGAGCTGCTTTTAAAAGCAAAATTCTATGAGTGGAAATATGCCCATGAACTGAGATCATGGGAATTGCAGCATTTGCACAAAGTTTGTGTCTTAGCTCTAACTGAGATGCATTCACGTGAAGCCTCTCAAAAGGGAGGCCATACAGAAGCTGCTGAAGCTCAGTGCTTACAACAACAACTTGACTCTTTAGAAAGAGTTTTCAGTGAAGCTGCAAAGGCTGACAAGCAAACCGAGGTCCCAGATTACTTTCGCTGTCCAATCAGTTACAGTGTGCTTCGAGATCCTGTAATTACTCCAAGTGGGCATACATATGAGAGGGAAGAGATTCTTCGACACCTTGGAAAAGTTTCGGACAAAAAGAAAAGGAAAAAATACCATGAAAAAAATCATTTTGATCCAATCACACAGGAACCTCTTGATCCATCTCAGCTTGTACCAAACTTGGCGATAAAGGAAGCAGTTGAGGCATTCATTGAGAAACATGCTTGGGCTTATGGGGAATTAGGCATGGATATTAGCCTGACTTGGCCTGGCTTTGGGTCGGACAGGCCTAATCGACCCTGA	927	0.4434	METRSAEKWFEEAEERRYYEDDFETAIDLYTNAINLCPNNAVYFTNRAFCHIKIGKWQEAVDDSRRAIELDNTSAEAHSILGEALLEKTEHVEAVRELKEAVNLERANGGTGEFYEWKYIRELLLKAKFYEWKYAHELRSWELQHLHKVCVLALTEMHSREASQKGGHTEAAEAQCLQQQLDSLERVFSEAAKADKQTEVPDYFRCPISYSVLRDPVITPSGHTYEREEILRHLGKVSDKKKRKKYHEKNHFDPITQEPLDPSQLVPNLAIKEAVEAFIEKHAWAYGELGMDISLTWPGFGSDRPNRP	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Accr6g01394	308	Gene3D	Tetratricopeptide repeat domain	2	128	IPR011990	GO:0005515
	Accr6g01394	308	CDD	RING-Ubox_CHIP	200	282	IPR045202	-
	Accr6g01394	308	ProSiteProfiles	U-box domain profile.	199	285	IPR003613	GO:0004842\|GO:0016567
	Accr6g01394	308	Coils	Coil	174	194	-	-
	Accr6g01394	308	ProSiteProfiles	TPR repeat profile.	75	108	IPR019734	GO:0005515
	Accr6g01394	308	SUPERFAMILY	RING/U-box	196	286	-	-
	Accr6g01394	308	SMART	Ubox_2	203	278	IPR003613	GO:0004842\|GO:0016567
	Accr6g01394	308	SMART	tpr_5	6	40	IPR019734	GO:0005515
	Accr6g01394	308	SMART	tpr_5	75	108	IPR019734	GO:0005515
	Accr6g01394	308	SMART	tpr_5	41	74	IPR019734	GO:0005515
	Accr6g01394	308	SUPERFAMILY	TPR-like	17	108	IPR011990	GO:0005515
	Accr6g01394	308	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	178	286	IPR013083	-
	Accr6g01394	308	Pfam	U-box domain	200	284	IPR003613	GO:0004842\|GO:0016567
	Accr6g01394	308	Pfam	Tetratricopeptide repeat	29	61	-	-
	Accr6g01394	308	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE CHIP	16	286	IPR045200	GO:0000209\|GO:0061630

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Accr6g01394	Accr-Chr6	43873925	43876909	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Accr6g01394	18	286	U-box Gene Family	AT3G07370	47.037	1.24e-74	229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Accr6g01394	K09561		-	gmx:100796519	256.144