Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01389 ATGGATGAAGTAGAAGCTGCTAGCTCACAACAACTTGAGGCTTTAGAATATGTTTTCCGTAAAGCTGCTGAGGCTGACATGCCTTCGGAGTTCCCAGATTACTTATGCTGCGCAATCACTCTTGGTATTCTTCAAGATCCTTTAATCACTCCATATGGACATACATATGACAAGGAAGCCATTATCCGGCATCTTGAGGGGAATAACTTTGATCCAATCACAGGAAGACCACTTGATCGATCACAACTTGTACCAAATTTGGCGGTCAAGAAAGCAGTCCTGGTATTCTTGGACAAACATGGTTGGGCATACAAAGAATTCATATAG 327 0.422 MDEVEAASSQQLEALEYVFRKAAEADMPSEFPDYLCCAITLGILQDPLITPYGHTYDKEAIIRHLEGNNFDPITGRPLDRSQLVPNLAVKKAVLVFLDKHGWAYKEFI 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01389 108 Pfam U-box domain 32 102 IPR003613 GO:0004842|GO:0016567
Accr6g01389 108 SUPERFAMILY RING/U-box 24 105 - -
Accr6g01389 108 ProSiteProfiles U-box domain profile. 30 103 IPR003613 GO:0004842|GO:0016567
Accr6g01389 108 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 105 IPR013083 -
Accr6g01389 108 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 5 106 IPR045200 GO:0000209|GO:0061630
Accr6g01389 108 SMART Ubox_2 34 96 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01389 Accr-Chr6 43813554 43814159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01389 2 105 U-box Gene Family AT3G07370 56.190 3.01e-37 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01389 K09561 - aew:130770586 138.658