Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr6g01292 ATGGCATTTGTTAAGGCTCAAAAATCAAAGGCCTACTTCAAGAGATATCAAGTTAAATTTAAGAGAAGAAGAGAGGGGAAAACTGATTATCGAGCTAGGATTAGATTGATCAATCAGGACAAGAACAAGTACAACACTCCCAAATATCGCTTTGTTGTTCGATTTACAAACAAAGATATTATTGCACAAATAACATCAGCTAGTATTGCCGGTGATAATGTTCTTGCTGCTGCATATGCACATGAGTTGCCACACTATGGTCTCGAAGCAGGTTTTACAAACTATGCTGCAGCTTATTGCACTGGTCTTCTCCTGGCTCGTCGAGTCCTTAAAATGCTTGAAATGGAAGAGGAGTATGAGGGCAATGTAGAGGCTTCAGGAGAGGACTTTTCTGTTGAACCTTCTGATACTAGGAGGCCTTTCCGTGCTCTACTTGATGTTGGTCTTATTAGGACTACAACTGGCAATCGTGTCTTTGGTGCCCTTAAGGGAGCATTGGATGGTGGATTAGATATTCCTCACGGCGACAAAAGGTTTGCTGGTTTTAACAAGGAAAAGAAAGAGCTTGATCCTGAGGTTCATCGGAGATATATCTTTGGTGGTCATGTTGCTGCATATATGAAGACTTTGATAGAGGATGAGCCAGAGAAATACCAATCGCACTTTAGTGAATATATAAAGCAAGGGTTAGAGGCTGATGGACTTGAAGAGATGTACAAAAAGGTTCATGCTGCCATTCGTGCGGACCCCACAATGAAGAAGTCTGAGAAGGAGCCACCAAAGGAACACAAGAGATACAACCTGAAGAAACTTACATACGAGCAGAGGAAGGCTAAGTTGATTGCCCGTGTGCAGGCCCTCAACTCTGTAGTTGATGCTGCTGAAGACGATGAGGATGATGAGTAA 906 0.4249 MAFVKAQKSKAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDNVLAAAYAHELPHYGLEAGFTNYAAAYCTGLLLARRVLKMLEMEEEYEGNVEASGEDFSVEPSDTRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHGDKRFAGFNKEKKELDPEVHRRYIFGGHVAAYMKTLIEDEPEKYQSHFSEYIKQGLEADGLEEMYKKVHAAIRADPTMKKSEKEPPKEHKRYNLKKLTYEQRKAKLIARVQALNSVVDAAEDDEDDE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr6g01292 301 CDD Ribosomal_L18_L5e 41 170 - -
Accr6g01292 301 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 289 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 FunFam 60S ribosomal protein L5 1 290 - -
Accr6g01292 301 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 MobiDBLite consensus disorder prediction 250 269 - -
Accr6g01292 301 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 Coils Coil 277 297 - -
Accr6g01292 301 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Accr6g01292 301 Gene3D - 1 291 - -
Accr6g01292 301 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 174 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Accr6g01292 301 SUPERFAMILY Translational machinery components 11 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr6g01292 Accr-Chr6 40380543 40383552 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr6g01292 1 288 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.639 0.0 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr6g01292 K02932 - qsa:O6P43_033473 515.383